Analysis of interatomic Contacts of Structural Units in PDB entry:
4DG8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DG8 entry

There is 1 chain in PDB entry 4DG8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 15LEU 513
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 4DG8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 24Right-handed 310
Helix 2
2
A
26 38Right-handed alpha
Helix 3
3
A
53 71Right-handed alpha
Helix 4
4
A
85 98Right-handed alpha
Helix 5
5
A
110 122Right-handed alpha
Helix 6
6
A
145 147Right-handed 310
Helix 7
7
A
184 192Right-handed alpha
Helix 8
8
A
194 198Right-handed 310
Helix 9
9
A
214 225Right-handed alpha
Helix 10
10
A
239 249Right-handed alpha
Helix 11
11
A
259 269Right-handed alpha
Helix 12
12
A
270 274Right-handed 310
Helix 13
13
A
287 298Right-handed alpha
Helix 14
14
A
309 313Right-handed 310
Helix 15
15
A
323 328Right-handed 310
Helix 16
16
A
375 382Right-handed alpha
Helix 17
17
A
429 438Right-handed alpha
Helix 18
18
A
470 477Right-handed alpha
Helix 19
19
A
478 482Right-handed 310
Helix 20
20
A
501 509Right-handed alpha
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There are 8 sheets in PDB entry 4DG8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 52first strand
Strand 2
A
42 46anti-parallel
Strand 3
A
229 232parallel
Strand 4
A
204 207parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 104first strand
Strand 2
A
77 81parallel
Strand 3
A
123 128parallel
Strand 4
A
141 143parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 170first strand
Strand 2
A
178 183anti-parallel
Strand 3
A
371 372anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 258first strand
Strand 2
A
278 282parallel
Strand 3
A
302 307parallel
Strand 4
A
317 320anti-parallel
Strand 5
A
335 336anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 345first strand
Strand 2
A
359 365anti-parallel
Strand 3
A
391 404anti-parallel
Strand 4
A
383 388anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 345first strand
Strand 2
A
359 365anti-parallel
Strand 3
A
391 404anti-parallel
Strand 4
A
410 414anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 422first strand
Strand 2
A
425 428anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
442 452first strand
Strand 2
A
455 464anti-parallel
Strand 3
A
485 488parallel
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