Analysis of interatomic Contacts of Structural Units in PDB entry:
4DG9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DG9 entry

There is 1 chain in PDB entry 4DG9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 16GLU 602
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 4DG9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 24Right-handed 310
Helix 2
2
A
26 38Right-handed alpha
Helix 3
3
A
53 71Right-handed alpha
Helix 4
4
A
85 98Right-handed alpha
Helix 5
5
A
110 122Right-handed alpha
Helix 6
6
A
184 192Right-handed alpha
Helix 7
7
A
214 225Right-handed alpha
Helix 8
8
A
239 249Right-handed alpha
Helix 9
9
A
259 269Right-handed alpha
Helix 10
10
A
270 274Right-handed 310
Helix 11
11
A
287 298Right-handed alpha
Helix 12
12
A
309 313Right-handed 310
Helix 13
13
A
322 328Right-handed 310
Helix 14
14
A
375 382Right-handed alpha
Helix 15
15
A
429 438Right-handed alpha
Helix 16
16
A
451 455Right-handed 310
Helix 17
17
A
470 477Right-handed alpha
Helix 18
18
A
478 482Right-handed 310
Helix 19
19
A
501 510Right-handed alpha
Helix 20
20
A
523 536Right-handed alpha
Helix 21
21
A
552 566Right-handed alpha
Helix 22
22
A
574 579Right-handed alpha
Helix 23
23
A
583 594Right-handed alpha
Helix 24
24
A
597 602Right-handed 310
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There are 8 sheets in PDB entry 4DG9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 52first strand
Strand 2
A
42 46anti-parallel
Strand 3
A
229 232parallel
Strand 4
A
204 207parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 104first strand
Strand 2
A
77 81parallel
Strand 3
A
123 128parallel
Strand 4
A
141 143parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 169first strand
Strand 2
A
179 183anti-parallel
Strand 3
A
372 373anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 258first strand
Strand 2
A
278 282parallel
Strand 3
A
302 307parallel
Strand 4
A
317 320anti-parallel
Strand 5
A
335 336anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 345first strand
Strand 2
A
359 365anti-parallel
Strand 3
A
392 404anti-parallel
Strand 4
A
383 387anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 345first strand
Strand 2
A
359 365anti-parallel
Strand 3
A
392 404anti-parallel
Strand 4
A
410 415anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 422first strand
Strand 2
A
425 428anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
442 450first strand
Strand 2
A
457 464anti-parallel
Strand 3
A
485 488parallel
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