Analysis of interatomic Contacts of Structural Units in PDB entry:
4DGF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DGF entry

There are 2 chains in PDB entry 4DGF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 440THR 561
B
 GLY 438ALA 562
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 4DGF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
444 448Right-handed 310
Helix 2
2
A
464 472Right-handed alpha
Helix 3
3
A
473 478Right-handed 310
Helix 4
4
A
496 513Right-handed alpha
Helix 5
5
A
523 533Right-handed alpha
Helix 6
6
A
534 540Right-handed alpha
Helix 7
7
A
541 544Right-handed 310
Helix 8
8
A
547 561Right-handed alpha
Helix 9
9
B
444 448Right-handed 310
Helix 10
10
B
464 472Right-handed alpha
Helix 11
11
B
474 478Right-handed 310
Helix 12
12
B
496 514Right-handed alpha
Helix 13
13
B
523 533Right-handed alpha
Helix 14
14
B
534 540Right-handed alpha
Helix 15
15
B
541 544Right-handed 310
Helix 16
16
B
547 560Right-handed alpha
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There are 2 sheets in PDB entry 4DGF. Click on sheet of interest to get list of strands forming it: A, B,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
454 458first strand
Strand 2
A
484 488parallel
Strand 3
A
516 520parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
454 458first strand
Strand 2
B
484 488parallel
Strand 3
B
516 520parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il