Analysis of interatomic Contacts of Structural Units in PDB entry:
4DGJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DGJ entry

There are 4 chains in PDB entry 4DGJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 1HIS 235
B
 ILE 1HIS 235
C
 ILE 1LEU 234
D
 ILE 1LEU 234
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 4DGJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
39 44Right-handed alpha
Helix 2
2
A
49 51Right-handed 310
Helix 3
3
A
153 161Right-handed alpha
Helix 4
4
A
226 232Right-handed alpha
Helix 5
5
B
39 44Right-handed alpha
Helix 6
6
B
61 65Right-handed 310
Helix 7
7
B
153 161Right-handed alpha
Helix 8
8
B
226 232Right-handed alpha
Helix 9
9
C
39 44Right-handed alpha
Helix 10
10
C
49 51Right-handed 310
Helix 11
11
C
153 161Right-handed alpha
Helix 12
12
C
226 232Right-handed alpha
Helix 13
13
D
39 44Right-handed alpha
Helix 14
14
D
49 51Right-handed 310
Helix 15
15
D
153 161Right-handed alpha
Helix 16
16
D
226 232Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 4DGJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
145 152anti-parallel
Strand 3
A
170 173anti-parallel
Strand 4
A
218 222anti-parallel
Strand 5
A
198 207anti-parallel
Strand 6
A
190 195anti-parallel
Strand 7
A
125 130anti-parallel
Strand 8
A
145 152anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 20first strand
Strand 2
A
23 30anti-parallel
Strand 3
A
35 38anti-parallel
Strand 4
A
94 98anti-parallel
Strand 5
A
71 80anti-parallel
Strand 6
A
53 57anti-parallel
Strand 7
A
15 20anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 6first strand
Strand 2
B
145 150anti-parallel
Strand 3
B
125 130anti-parallel
Strand 4
B
190 195anti-parallel
Strand 5
B
198 207anti-parallel
Strand 6
B
218 222anti-parallel
Strand 7
B
170 173anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 20first strand
Strand 2
B
23 30anti-parallel
Strand 3
B
35 38anti-parallel
Strand 4
B
94 98anti-parallel
Strand 5
B
71 80anti-parallel
Strand 6
B
53 57anti-parallel
Strand 7
B
15 20anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 6first strand
Strand 2
C
145 150anti-parallel
Strand 3
C
125 130anti-parallel
Strand 4
C
190 195anti-parallel
Strand 5
C
198 207anti-parallel
Strand 6
C
218 222anti-parallel
Strand 7
C
170 173anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
15 20first strand
Strand 2
C
23 32anti-parallel
Strand 3
C
35 38anti-parallel
Strand 4
C
94 98anti-parallel
Strand 5
C
71 80anti-parallel
Strand 6
C
53 57anti-parallel
Strand 7
C
15 20anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
5 6first strand
Strand 2
D
145 150anti-parallel
Strand 3
D
125 130anti-parallel
Strand 4
D
190 195anti-parallel
Strand 5
D
198 207anti-parallel
Strand 6
D
218 222anti-parallel
Strand 7
D
170 173anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
15 20first strand
Strand 2
D
23 30anti-parallel
Strand 3
D
35 38anti-parallel
Strand 4
D
94 98anti-parallel
Strand 5
D
71 80anti-parallel
Strand 6
D
53 57anti-parallel
Strand 7
D
15 20anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il