Analysis of interatomic Contacts of Structural Units in PDB entry:
4DGK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DGK entry

There is 1 chain in PDB entry 4DGK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 492
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 4DGK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 23Right-handed alpha
Helix 2
2
A
60 69Right-handed alpha
Helix 3
3
A
73 77Right-handed 310
Helix 4
4
A
102 114Right-handed alpha
Helix 5
5
A
116 132Right-handed alpha
Helix 6
6
A
146 153Right-handed alpha
Helix 7
7
A
154 157Right-handed 310
Helix 8
8
A
160 172Right-handed alpha
Helix 9
9
A
176 192Right-handed alpha
Helix 10
10
A
200 209Right-handed alpha
Helix 11
11
A
218 234Right-handed alpha
Helix 12
12
A
355 358Right-handed 310
Helix 13
13
A
359 363Right-handed 310
Helix 14
14
A
385 405Right-handed alpha
Helix 15
15
A
408 412Right-handed alpha
Helix 16
16
A
472 492Right-handed alpha
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There are 5 sheets in PDB entry 4DGK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 239first strand
Strand 2
A
27 30parallel
Strand 3
A
4 7parallel
Strand 4
A
270 272parallel
Strand 5
A
460 462parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
48 51anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 83first strand
Strand 2
A
213 216anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 99first strand
Strand 2
A
87 91anti-parallel
Strand 3
A
323 328parallel
Strand 4
A
347 353anti-parallel
Strand 5
A
368 376anti-parallel
Strand 6
A
305 313anti-parallel
Strand 7
A
413 419anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 250first strand
Strand 2
A
253 259anti-parallel
Strand 3
A
264 266anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il