Analysis of interatomic Contacts of Structural Units in PDB entry:
4DGL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DGL entry

There are 4 chains in PDB entry 4DGL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 8ARG 215
B
 VAL 7PHE 207
C
 SER 2GLY 335
D
 GLY 3ASP 330
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 4DGL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 15Right-handed alpha
Helix 2
2
A
26 32Right-handed alpha
Helix 3
3
A
38 42Right-handed 310
Helix 4
4
A
45 54Right-handed alpha
Helix 5
5
A
67 88Right-handed alpha
Helix 6
6
A
90 103Right-handed alpha
Helix 7
7
A
111 115Right-handed 310
Helix 8
8
A
155 159Right-handed 310
Helix 9
9
A
162 171Right-handed alpha
Helix 10
10
A
172 175Right-handed 310
Helix 11
11
A
194 199Right-handed alpha
Helix 12
12
A
201 206Right-handed alpha
Helix 13
13
B
8 14Right-handed alpha
Helix 14
14
B
26 32Right-handed alpha
Helix 15
15
B
33 37Right-handed 310
Helix 16
16
B
38 42Right-handed 310
Helix 17
17
B
45 54Right-handed alpha
Helix 18
18
B
67 88Right-handed alpha
Helix 19
19
B
90 104Right-handed alpha
Helix 20
20
B
111 115Right-handed 310
Helix 21
21
B
148 152Right-handed 310
Helix 22
22
B
155 159Right-handed 310
Helix 23
23
B
162 171Right-handed alpha
Helix 24
24
B
172 175Right-handed 310
Helix 25
25
B
194 206Right-handed alpha
Helix 26
26
C
14 19Right-handed alpha
Helix 27
27
C
20 25Right-handed alpha
Helix 28
28
C
26 29Right-handed 310
Helix 29
29
C
35 37Right-handed 310
Helix 30
30
C
74 88Right-handed alpha
Helix 31
31
C
129 150Right-handed alpha
Helix 32
32
C
158 160Right-handed 310
Helix 33
33
C
175 179Right-handed 310
Helix 34
34
C
194 198Right-handed 310
Helix 35
35
C
199 204Right-handed alpha
Helix 36
36
C
211 228Right-handed alpha
Helix 37
37
C
237 250Right-handed alpha
Helix 38
38
C
250 261Right-handed alpha
Helix 39
39
C
266 274Right-handed alpha
Helix 40
40
C
280 285Right-handed 310
Helix 41
41
C
294 303Right-handed alpha
Helix 42
42
C
308 312Right-handed 310
Helix 43
43
C
314 320Right-handed alpha
Helix 44
44
C
321 323Right-handed 310
Helix 45
45
C
324 334Right-handed alpha
Helix 46
46
D
25 29Right-handed 310
Helix 47
47
D
35 37Right-handed 310
Helix 48
48
D
74 88Right-handed alpha
Helix 49
49
D
120 128Right-handed alpha
Helix 50
50
D
129 150Right-handed alpha
Helix 51
51
D
158 160Right-handed 310
Helix 52
52
D
194 198Right-handed 310
Helix 53
53
D
199 204Right-handed alpha
Helix 54
54
D
211 228Right-handed alpha
Helix 55
55
D
237 250Right-handed alpha
Helix 56
56
D
250 261Right-handed alpha
Helix 57
57
D
267 274Right-handed alpha
Helix 58
58
D
280 285Right-handed 310
Helix 59
59
D
289 293Right-handed 310
Helix 60
60
D
294 305Right-handed alpha
Helix 61
61
D
308 312Right-handed 310
Helix 62
62
D
314 319Right-handed alpha
Helix 63
63
D
324 329Right-handed alpha
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There are 8 sheets in PDB entry 4DGL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 123first strand
Strand 2
A
133 136anti-parallel
Strand 3
A
143 144anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 187first strand
Strand 2
A
190 192anti-parallel
Strand 3
D
39 47parallel
Strand 4
D
51 58anti-parallel
Strand 5
D
64 70anti-parallel
Strand 6
D
109 114anti-parallel
Strand 7
D
97 102anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 122first strand
Strand 2
B
134 136anti-parallel
Strand 3
B
143 144anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
186 187first strand
Strand 2
B
190 192anti-parallel
Strand 3
C
39 47parallel
Strand 4
C
51 58anti-parallel
Strand 5
C
64 70anti-parallel
Strand 6
C
109 114anti-parallel
Strand 7
C
97 102anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
152 153first strand
Strand 2
C
180 181anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
162 165first strand
Strand 2
C
170 173anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
152 153first strand
Strand 2
D
180 181anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
162 165first strand
Strand 2
D
170 173anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il