Analysis of interatomic Contacts of Structural Units in PDB entry:
4DGS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DGS entry

There is 1 chain in PDB entry 4DGS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 10VAL 316
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 4DGS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 23Right-handed alpha
Helix 2
2
A
23 28Right-handed alpha
Helix 3
3
A
35 37Right-handed 310
Helix 4
4
A
38 46Right-handed alpha
Helix 5
5
A
47 49Right-handed 310
Helix 6
6
A
61 68Right-handed alpha
Helix 7
7
A
85 92Right-handed alpha
Helix 8
8
A
103 120Right-handed alpha
Helix 9
9
A
121 131Right-handed alpha
Helix 10
10
A
157 169Right-handed alpha
Helix 11
11
A
192 199Right-handed alpha
Helix 12
12
A
219 225Right-handed alpha
Helix 13
13
A
270 275Right-handed alpha
Helix 14
14
A
288 308Right-handed alpha
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There are 2 sheets in PDB entry 4DGS. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
11 12parallel
Strand 3
A
51 55parallel
Strand 4
A
73 77parallel
Strand 5
A
95 97parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 189first strand
Strand 2
A
173 177parallel
Strand 3
A
150 154parallel
Strand 4
A
202 205parallel
Strand 5
A
230 233parallel
Strand 6
A
256 259parallel
Strand 7
A
278 280parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il