Analysis of interatomic Contacts of Structural Units in PDB entry:
4DHG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DHG entry

There are 4 chains in PDB entry 4DHG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -17TRP 419
B
 SER 0TRP 419
C
 LEU -4TRP 419
D
 HIS -17TRP 419
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 65 helices in PDB entry 4DHG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
51 65Right-handed alpha
Helix 2
2
A
72 84Right-handed alpha
Helix 3
3
A
101 125Right-handed alpha
Helix 4
4
A
127 132Right-handed alpha
Helix 5
5
A
166 182Right-handed alpha
Helix 6
6
A
194 209Right-handed alpha
Helix 7
7
A
223 234Right-handed alpha
Helix 8
8
A
247 256Right-handed alpha
Helix 9
9
A
270 272Right-handed 310
Helix 10
10
A
273 281Right-handed alpha
Helix 11
11
A
289 294Right-handed alpha
Helix 12
12
A
295 309Right-handed alpha
Helix 13
13
A
321 334Right-handed alpha
Helix 14
14
A
345 350Right-handed 310
Helix 15
15
A
380 394Right-handed alpha
Helix 16
16
A
400 409Right-handed alpha
Helix 17
17
B
51 63Right-handed alpha
Helix 18
18
B
72 85Right-handed alpha
Helix 19
19
B
100 125Right-handed alpha
Helix 20
20
B
127 132Right-handed alpha
Helix 21
21
B
166 182Right-handed alpha
Helix 22
22
B
194 209Right-handed alpha
Helix 23
23
B
223 234Right-handed alpha
Helix 24
24
B
247 256Right-handed alpha
Helix 25
25
B
270 272Right-handed 310
Helix 26
26
B
273 281Right-handed alpha
Helix 27
27
B
289 294Right-handed alpha
Helix 28
28
B
295 309Right-handed alpha
Helix 29
29
B
321 334Right-handed alpha
Helix 30
30
B
345 350Right-handed 310
Helix 31
31
B
380 394Right-handed alpha
Helix 32
32
B
400 407Right-handed alpha
Helix 33
33
C
-4 0Right-handed 310
Helix 34
34
C
51 63Right-handed alpha
Helix 35
35
C
72 85Right-handed alpha
Helix 36
36
C
100 125Right-handed alpha
Helix 37
37
C
127 132Right-handed alpha
Helix 38
38
C
166 182Right-handed alpha
Helix 39
39
C
194 209Right-handed alpha
Helix 40
40
C
223 234Right-handed alpha
Helix 41
41
C
247 256Right-handed alpha
Helix 42
42
C
270 272Right-handed 310
Helix 43
43
C
273 281Right-handed alpha
Helix 44
44
C
289 294Right-handed alpha
Helix 45
45
C
295 309Right-handed alpha
Helix 46
46
C
321 334Right-handed alpha
Helix 47
47
C
345 350Right-handed 310
Helix 48
48
C
380 394Right-handed alpha
Helix 49
49
C
400 407Right-handed alpha
Helix 50
50
D
51 64Right-handed alpha
Helix 51
51
D
72 84Right-handed alpha
Helix 52
52
D
101 125Right-handed alpha
Helix 53
53
D
127 132Right-handed alpha
Helix 54
54
D
166 182Right-handed alpha
Helix 55
55
D
194 209Right-handed alpha
Helix 56
56
D
223 234Right-handed alpha
Helix 57
57
D
247 256Right-handed alpha
Helix 58
58
D
270 272Right-handed 310
Helix 59
59
D
273 281Right-handed alpha
Helix 60
60
D
289 294Right-handed alpha
Helix 61
61
D
295 309Right-handed alpha
Helix 62
62
D
321 334Right-handed alpha
Helix 63
63
D
345 350Right-handed 310
Helix 64
64
D
380 394Right-handed alpha
Helix 65
65
D
400 409Right-handed alpha
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There are 16 sheets in PDB entry 4DHG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 14first strand
Strand 2
A
28 38anti-parallel
Strand 3
A
43 49anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 20first strand
Strand 2
A
23 24anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 141first strand
Strand 2
A
366 368anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 147first strand
Strand 2
A
186 189parallel
Strand 3
A
214 217parallel
Strand 4
A
240 242parallel
Strand 5
A
262 264parallel
Strand 6
A
285 288parallel
Strand 7
A
312 315parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 14first strand
Strand 2
B
28 38anti-parallel
Strand 3
B
43 49anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 20first strand
Strand 2
B
23 24anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 141first strand
Strand 2
B
366 368anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 147first strand
Strand 2
B
186 189parallel
Strand 3
B
214 217parallel
Strand 4
B
240 242parallel
Strand 5
B
262 264parallel
Strand 6
B
285 288parallel
Strand 7
B
312 315parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 14first strand
Strand 2
C
28 38anti-parallel
Strand 3
C
43 49anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
19 20first strand
Strand 2
C
23 24anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
139 141first strand
Strand 2
C
366 368anti-parallel
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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
144 147first strand
Strand 2
C
186 189parallel
Strand 3
C
214 217parallel
Strand 4
C
240 242parallel
Strand 5
C
262 264parallel
Strand 6
C
285 288parallel
Strand 7
C
312 315parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 14first strand
Strand 2
D
28 38anti-parallel
Strand 3
D
43 49anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
19 20first strand
Strand 2
D
23 24anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
139 141first strand
Strand 2
D
366 368anti-parallel
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There are 7 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
144 147first strand
Strand 2
D
186 189parallel
Strand 3
D
214 217parallel
Strand 4
D
240 242parallel
Strand 5
D
262 264parallel
Strand 6
D
285 288parallel
Strand 7
D
312 315parallel
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