Analysis of interatomic Contacts of Structural Units in PDB entry:
4DHJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4DHJ entry

There are 9 chains in PDB entry 4DHJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 28	ASP 275
B	MET 501	GLY 575
E	LEU 31	ASP 275
F	MET 501	GLY 575
D	MET 501	LEU 571
C	GLY 3	ASN 151
I	ASP 36	SER 276
J	MET 501	GLY 575
K	GLY 3	VAL 69

There are 82 helices in PDB entry 4DHJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	29	38	Right-handed alpha
Helix 2	2	A	39	41	Right-handed 310
Helix 3	3	A	50	55	Right-handed alpha
Helix 4	4	A	62	73	Right-handed alpha
Helix 5	5	A	87	103	Right-handed alpha
Helix 6	6	A	104	125	Right-handed alpha
Helix 7	7	A	128	148	Right-handed alpha
Helix 8	8	A	152	161	Right-handed alpha
Helix 9	9	A	162	184	Right-handed alpha
Helix 10	10	A	184	189	Right-handed alpha
Helix 11	11	A	190	192	Right-handed 310
Helix 12	12	A	197	206	Right-handed alpha
Helix 13	13	A	214	225	Right-handed alpha
Helix 14	14	B	522	535	Right-handed alpha
Helix 15	15	B	537	539	Right-handed 310
Helix 16	16	B	556	560	Right-handed 310
Helix 17	17	E	34	39	Right-handed alpha
Helix 18	18	E	50	55	Right-handed alpha
Helix 19	19	E	62	73	Right-handed alpha
Helix 20	20	E	87	104	Right-handed alpha
Helix 21	21	E	104	125	Right-handed alpha
Helix 22	22	E	128	149	Right-handed alpha
Helix 23	23	E	152	162	Right-handed alpha
Helix 24	24	E	162	184	Right-handed alpha
Helix 25	25	E	184	189	Right-handed alpha
Helix 26	26	E	190	192	Right-handed 310
Helix 27	27	E	197	206	Right-handed alpha
Helix 28	28	E	214	225	Right-handed alpha
Helix 29	29	F	522	535	Right-handed alpha
Helix 30	30	F	537	539	Right-handed 310
Helix 31	31	D	522	532	Right-handed alpha
Helix 32	32	D	556	560	Right-handed 310
Helix 33	33	C	5	18	Right-handed alpha
Helix 34	34	C	88	92	Right-handed 310
Helix 35	35	C	100	114	Right-handed alpha
Helix 36	36	C	123	132	Right-handed alpha
Helix 37	37	C	132	148	Right-handed alpha
Helix 38	38	I	36	41	Right-handed 310
Helix 39	39	I	50	55	Right-handed alpha
Helix 40	40	I	62	74	Right-handed alpha
Helix 41	41	I	87	104	Right-handed alpha
Helix 42	42	I	104	125	Right-handed alpha
Helix 43	43	I	128	149	Right-handed alpha
Helix 44	44	I	152	160	Right-handed alpha
Helix 45	45	I	162	184	Right-handed alpha
Helix 46	46	I	184	189	Right-handed alpha
Helix 47	47	I	190	192	Right-handed 310
Helix 48	48	I	197	206	Right-handed alpha
Helix 49	49	I	214	225	Right-handed alpha
Helix 50	50	J	522	535	Right-handed alpha
Helix 51	51	J	537	539	Right-handed 310
Helix 52	52	J	556	560	Right-handed 310
Helix 53	53	K	5	18	Right-handed alpha
Helix 54	54	K	88	92	Right-handed 310
Helix 55	55	K	100	114	Right-handed alpha
Helix 56	56	K	123	132	Right-handed alpha
Helix 57	57	K	132	148	Right-handed alpha
Helix 58	58	G	5	18	Right-handed alpha
Helix 59	59	G	88	92	Right-handed 310
Helix 60	60	G	100	114	Right-handed alpha
Helix 61	61	G	123	132	Right-handed alpha
Helix 62	62	G	134	148	Right-handed alpha
Helix 63	63	L	50	55	Right-handed alpha
Helix 64	64	L	62	74	Right-handed alpha
Helix 65	65	L	87	104	Right-handed alpha
Helix 66	66	L	104	125	Right-handed alpha
Helix 67	67	L	128	148	Right-handed alpha
Helix 68	68	L	152	161	Right-handed alpha
Helix 69	69	L	162	184	Right-handed alpha
Helix 70	70	L	184	189	Right-handed alpha
Helix 71	71	L	190	192	Right-handed 310
Helix 72	72	L	197	206	Right-handed alpha
Helix 73	73	L	214	225	Right-handed alpha
Helix 74	74	M	522	535	Right-handed alpha
Helix 75	75	M	537	539	Right-handed 310
Helix 76	76	M	556	560	Right-handed 310
Helix 77	77	H	555	559	Right-handed 310
Helix 78	78	N	5	18	Right-handed alpha
Helix 79	79	N	88	92	Right-handed 310
Helix 80	80	N	100	114	Right-handed alpha
Helix 81	81	N	123	132	Right-handed alpha
Helix 82	82	N	132	148	Right-handed alpha

There are 15 sheets in PDB entry 4DHJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	49	first strand
Strand 2	A	76	80	anti-parallel
Strand 3	A	267	273	anti-parallel
Strand 4	A	259	264	anti-parallel
Strand 5	A	229	233	parallel
Strand 6	A	245	248	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	512	516	first strand
Strand 2	B	502	507	anti-parallel
Strand 3	B	566	571	parallel
Strand 4	B	541	545	anti-parallel
Strand 5	B	548	549	anti-parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	49	first strand
Strand 2	E	76	80	anti-parallel
Strand 3	E	267	273	anti-parallel
Strand 4	E	259	264	anti-parallel
Strand 5	E	229	233	parallel
Strand 6	E	244	248	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	512	516	first strand
Strand 2	F	502	507	anti-parallel
Strand 3	F	566	571	parallel
Strand 4	F	541	545	anti-parallel
Strand 5	F	548	549	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	512	516	first strand
Strand 2	D	502	506	anti-parallel
Strand 3	D	566	570	parallel
Strand 4	D	542	545	anti-parallel
Strand 5	D	548	549	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	27	first strand
Strand 2	C	34	40	anti-parallel
Strand 3	C	51	57	anti-parallel
Strand 4	C	68	71	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	48	49	first strand
Strand 2	I	76	80	anti-parallel
Strand 3	I	267	273	anti-parallel
Strand 4	I	259	264	anti-parallel
Strand 5	I	229	233	parallel
Strand 6	I	244	248	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	512	516	first strand
Strand 2	J	502	507	anti-parallel
Strand 3	J	566	571	parallel
Strand 4	J	541	545	anti-parallel
Strand 5	J	548	549	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	23	27	first strand
Strand 2	K	34	40	anti-parallel
Strand 3	K	51	57	anti-parallel
Strand 4	K	68	71	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	23	27	first strand
Strand 2	G	34	40	anti-parallel
Strand 3	G	51	57	anti-parallel
Strand 4	G	68	71	anti-parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	48	49	first strand
Strand 2	L	76	80	anti-parallel
Strand 3	L	267	273	anti-parallel
Strand 4	L	259	264	anti-parallel
Strand 5	L	229	233	parallel
Strand 6	L	244	248	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	512	516	first strand
Strand 2	M	502	507	anti-parallel
Strand 3	M	566	571	parallel
Strand 4	M	541	545	anti-parallel
Strand 5	M	548	549	anti-parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	512	516	first strand
Strand 2	H	502	507	anti-parallel
Strand 3	H	566	569	parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	544	545	first strand
Strand 2	H	548	549	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	23	28	first strand
Strand 2	N	31	40	anti-parallel
Strand 3	N	51	57	anti-parallel
Strand 4	N	68	71	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4DHJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
4DHJ