Analysis of interatomic Contacts of Structural Units in PDB entry:
4DHZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DHZ entry

There are 4 chains in PDB entry 4DHZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 20ASP 275
B
 MET 501GLY 575
E
 MET 501ARG 572
F
 GLY 3ASN 151
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 4DHZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 28Right-handed alpha
Helix 2
2
A
28 41Right-handed alpha
Helix 3
3
A
50 55Right-handed alpha
Helix 4
4
A
62 75Right-handed alpha
Helix 5
5
A
87 102Right-handed alpha
Helix 6
6
A
104 125Right-handed alpha
Helix 7
7
A
128 149Right-handed alpha
Helix 8
8
A
152 160Right-handed alpha
Helix 9
9
A
162 184Right-handed alpha
Helix 10
10
A
184 189Right-handed alpha
Helix 11
11
A
190 192Right-handed 310
Helix 12
12
A
197 206Right-handed alpha
Helix 13
13
A
214 226Right-handed alpha
Helix 14
14
B
522 534Right-handed alpha
Helix 15
15
B
537 539Right-handed 310
Helix 16
16
B
555 560Right-handed 310
Helix 17
17
E
523 534Right-handed alpha
Helix 18
18
E
556 560Right-handed 310
Helix 19
19
F
5 18Right-handed alpha
Helix 20
20
F
88 92Right-handed 310
Helix 21
21
F
100 110Right-handed alpha
Helix 22
22
F
123 132Right-handed alpha
Helix 23
23
F
132 148Right-handed alpha
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There are 4 sheets in PDB entry 4DHZ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
76 80anti-parallel
Strand 3
A
267 273anti-parallel
Strand 4
A
259 264anti-parallel
Strand 5
A
229 233parallel
Strand 6
A
244 248anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
511 516first strand
Strand 2
B
502 507anti-parallel
Strand 3
B
566 571parallel
Strand 4
B
541 545anti-parallel
Strand 5
B
548 549anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
512 516first strand
Strand 2
E
502 506anti-parallel
Strand 3
E
566 571parallel
Strand 4
E
541 544anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
23 27first strand
Strand 2
F
34 40anti-parallel
Strand 3
F
51 57anti-parallel
Strand 4
F
68 71anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il