Analysis of interatomic Contacts of Structural Units in PDB entry:
4DI6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DI6 entry

There are 6 chains in PDB entry 4DI6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1CYS 169
B
 MET 1CYS 169
C
 LEU 4CYS 169
D
 MET 1CYS 169
E
 SER 2CYS 169
F
 SER 2CYS 169
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 66 helices in PDB entry 4DI6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 19Right-handed alpha
Helix 2
2
A
21 33Right-handed alpha
Helix 3
3
A
45 53Right-handed alpha
Helix 4
4
A
54 62Right-handed alpha
Helix 5
5
A
63 75Right-handed alpha
Helix 6
6
A
88 98Right-handed alpha
Helix 7
7
A
109 115Right-handed alpha
Helix 8
8
A
118 126Right-handed alpha
Helix 9
9
A
138 150Right-handed alpha
Helix 10
10
A
151 155Right-handed 310
Helix 11
11
A
162 167Right-handed alpha
Helix 12
12
B
13 19Right-handed alpha
Helix 13
13
B
21 33Right-handed alpha
Helix 14
14
B
45 53Right-handed alpha
Helix 15
15
B
54 62Right-handed alpha
Helix 16
16
B
63 75Right-handed alpha
Helix 17
17
B
88 98Right-handed alpha
Helix 18
18
B
109 115Right-handed alpha
Helix 19
19
B
118 126Right-handed alpha
Helix 20
20
B
138 150Right-handed alpha
Helix 21
21
B
151 155Right-handed 310
Helix 22
22
B
162 167Right-handed alpha
Helix 23
23
C
13 19Right-handed alpha
Helix 24
24
C
21 33Right-handed alpha
Helix 25
25
C
45 53Right-handed alpha
Helix 26
26
C
54 62Right-handed alpha
Helix 27
27
C
63 75Right-handed alpha
Helix 28
28
C
88 98Right-handed alpha
Helix 29
29
C
109 115Right-handed alpha
Helix 30
30
C
118 126Right-handed alpha
Helix 31
31
C
138 150Right-handed alpha
Helix 32
32
C
151 155Right-handed 310
Helix 33
33
C
162 167Right-handed alpha
Helix 34
34
D
13 19Right-handed alpha
Helix 35
35
D
21 33Right-handed alpha
Helix 36
36
D
45 53Right-handed alpha
Helix 37
37
D
54 62Right-handed alpha
Helix 38
38
D
63 75Right-handed alpha
Helix 39
39
D
88 98Right-handed alpha
Helix 40
40
D
109 115Right-handed alpha
Helix 41
41
D
118 126Right-handed alpha
Helix 42
42
D
138 150Right-handed alpha
Helix 43
43
D
151 155Right-handed 310
Helix 44
44
D
162 167Right-handed alpha
Helix 45
45
E
13 19Right-handed alpha
Helix 46
46
E
21 33Right-handed alpha
Helix 47
47
E
45 53Right-handed alpha
Helix 48
48
E
54 62Right-handed alpha
Helix 49
49
E
63 75Right-handed alpha
Helix 50
50
E
88 98Right-handed alpha
Helix 51
51
E
109 115Right-handed alpha
Helix 52
52
E
118 126Right-handed alpha
Helix 53
53
E
138 150Right-handed alpha
Helix 54
54
E
151 155Right-handed 310
Helix 55
55
E
162 167Right-handed alpha
Helix 56
56
F
13 19Right-handed alpha
Helix 57
57
F
21 33Right-handed alpha
Helix 58
58
F
45 53Right-handed alpha
Helix 59
59
F
54 62Right-handed alpha
Helix 60
60
F
63 75Right-handed alpha
Helix 61
61
F
88 98Right-handed alpha
Helix 62
62
F
109 115Right-handed alpha
Helix 63
63
F
118 126Right-handed alpha
Helix 64
64
F
138 150Right-handed alpha
Helix 65
65
F
151 155Right-handed 310
Helix 66
66
F
162 167Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 4DI6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 44first strand
Strand 2
A
77 87anti-parallel
Strand 3
A
5 12anti-parallel
Strand 4
A
133 135anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 44first strand
Strand 2
B
77 87anti-parallel
Strand 3
B
5 12anti-parallel
Strand 4
B
133 135anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
35 44first strand
Strand 2
C
77 87anti-parallel
Strand 3
C
5 12anti-parallel
Strand 4
C
133 135anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
35 44first strand
Strand 2
D
77 87anti-parallel
Strand 3
D
5 12anti-parallel
Strand 4
D
133 135anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
35 44first strand
Strand 2
E
77 87anti-parallel
Strand 3
E
5 12anti-parallel
Strand 4
E
133 135anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
35 44first strand
Strand 2
F
77 87anti-parallel
Strand 3
F
5 12anti-parallel
Strand 4
F
133 135anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il