Analysis of interatomic Contacts of Structural Units in PDB entry:
4DIE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DIE entry

There are 4 chains in PDB entry 4DIE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1THR 217
B
 SER -1ARG 218
C
 SER -1ARG 218
D
 SER -1ARG 218
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 4DIE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 23Right-handed alpha
Helix 2
2
A
30 45Right-handed alpha
Helix 3
3
A
50 58Right-handed alpha
Helix 4
4
A
83 86Right-handed 310
Helix 5
5
A
87 99Right-handed alpha
Helix 6
6
A
100 117Right-handed alpha
Helix 7
7
A
145 157Right-handed alpha
Helix 8
8
A
170 182Right-handed alpha
Helix 9
9
A
203 216Right-handed alpha
Helix 10
10
B
11 23Right-handed alpha
Helix 11
11
B
30 45Right-handed alpha
Helix 12
12
B
50 58Right-handed alpha
Helix 13
13
B
83 86Right-handed 310
Helix 14
14
B
87 99Right-handed alpha
Helix 15
15
B
100 117Right-handed alpha
Helix 16
16
B
145 154Right-handed alpha
Helix 17
17
B
175 182Right-handed alpha
Helix 18
18
B
203 216Right-handed alpha
Helix 19
19
C
11 23Right-handed alpha
Helix 20
20
C
30 45Right-handed alpha
Helix 21
21
C
50 58Right-handed alpha
Helix 22
22
C
83 86Right-handed 310
Helix 23
23
C
87 99Right-handed alpha
Helix 24
24
C
100 117Right-handed alpha
Helix 25
25
C
145 158Right-handed alpha
Helix 26
26
C
168 182Right-handed alpha
Helix 27
27
C
203 216Right-handed alpha
Helix 28
28
D
11 23Right-handed alpha
Helix 29
29
D
30 45Right-handed alpha
Helix 30
30
D
50 58Right-handed alpha
Helix 31
31
D
83 86Right-handed 310
Helix 32
32
D
87 99Right-handed alpha
Helix 33
33
D
100 117Right-handed alpha
Helix 34
34
D
145 152Right-handed alpha
Helix 35
35
D
174 182Right-handed alpha
Helix 36
36
D
203 216Right-handed alpha
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There are 8 sheets in PDB entry 4DIE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 29first strand
Strand 2
A
121 125parallel
Strand 3
A
1 5parallel
Strand 4
A
138 143parallel
Strand 5
A
195 198parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 65first strand
Strand 2
A
74 76anti-parallel
Strand 3
A
79 80anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 29first strand
Strand 2
B
121 125parallel
Strand 3
B
1 5parallel
Strand 4
B
138 143parallel
Strand 5
B
195 198parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 65first strand
Strand 2
B
74 76anti-parallel
Strand 3
B
79 80anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
26 29first strand
Strand 2
C
121 125parallel
Strand 3
C
1 5parallel
Strand 4
C
138 143parallel
Strand 5
C
195 198parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
63 65first strand
Strand 2
C
74 76anti-parallel
Strand 3
C
79 80anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
26 29first strand
Strand 2
D
121 125parallel
Strand 3
D
1 5parallel
Strand 4
D
138 143parallel
Strand 5
D
195 198parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
63 65first strand
Strand 2
D
74 76anti-parallel
Strand 3
D
79 80anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il