Analysis of interatomic Contacts of Structural Units in PDB entry:
4DIM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DIM entry

There is 1 chain in PDB entry 4DIM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3LYS 400
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 4DIM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 15Right-handed 310
Helix 2
2
A
16 27Right-handed alpha
Helix 3
3
A
39 46Right-handed alpha
Helix 4
4
A
56 64Right-handed alpha
Helix 5
5
A
80 92Right-handed alpha
Helix 6
6
A
97 106Right-handed alpha
Helix 7
7
A
106 118Right-handed alpha
Helix 8
8
A
129 139Right-handed alpha
Helix 9
9
A
162 177Right-handed alpha
Helix 10
10
A
232 251Right-handed alpha
Helix 11
11
A
281 291Right-handed alpha
Helix 12
12
A
293 303Right-handed alpha
Helix 13
13
A
307 312Right-handed alpha
Helix 14
14
A
366 370Right-handed 310
Helix 15
15
A
380 393Right-handed alpha
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There are 4 sheets in PDB entry 4DIM. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 51first strand
Strand 2
A
29 34parallel
Strand 3
A
6 10parallel
Strand 4
A
71 73parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 125first strand
Strand 2
A
183 186anti-parallel
Strand 3
A
144 147anti-parallel
Strand 4
A
158 160anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 274first strand
Strand 2
A
255 264anti-parallel
Strand 3
A
191 200anti-parallel
Strand 4
A
203 216anti-parallel
Strand 5
A
220 227anti-parallel
Strand 6
A
320 326anti-parallel
Strand 7
A
372 378anti-parallel
Strand 8
A
348 353anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 361first strand
Strand 2
A
333 340anti-parallel
Strand 3
A
395 399anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il