Analysis of interatomic Contacts of Structural Units in PDB entry:
4DJ2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4DJ2 entry

There are 4 chains in PDB entry 4DJ2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 196	HIS 502
B	ASP 196	HIS 502
C	GLU 204	HIS 502
D	TYR 212	HIS 502

There are 43 helices in PDB entry 4DJ2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	201	213	Right-handed alpha
Helix 2	2	A	236	243	Right-handed alpha
Helix 3	3	A	253	258	Right-handed 310
Helix 4	4	A	259	270	Right-handed alpha
Helix 5	5	A	354	357	Right-handed 310
Helix 6	6	A	376	382	Right-handed alpha
Helix 7	7	A	384	389	Right-handed alpha
Helix 8	8	A	392	397	Right-handed 310
Helix 9	9	A	398	400	Right-handed 310
Helix 10	10	A	401	413	Right-handed alpha
Helix 11	11	A	484	499	Right-handed alpha
Helix 12	12	B	203	216	Right-handed alpha
Helix 13	13	B	236	243	Right-handed alpha
Helix 14	14	B	253	258	Right-handed 310
Helix 15	15	B	262	270	Right-handed alpha
Helix 16	16	B	354	357	Right-handed 310
Helix 17	17	B	376	382	Right-handed alpha
Helix 18	18	B	384	389	Right-handed alpha
Helix 19	19	B	392	397	Right-handed 310
Helix 20	20	B	398	400	Right-handed 310
Helix 21	21	B	401	416	Right-handed alpha
Helix 22	22	B	485	498	Right-handed alpha
Helix 23	23	C	236	243	Right-handed alpha
Helix 24	24	C	245	249	Right-handed 310
Helix 25	25	C	253	257	Right-handed 310
Helix 26	26	C	259	270	Right-handed alpha
Helix 27	27	C	271	275	Right-handed 310
Helix 28	28	C	376	382	Right-handed alpha
Helix 29	29	C	384	389	Right-handed alpha
Helix 30	30	C	392	397	Right-handed 310
Helix 31	31	C	398	403	Right-handed 310
Helix 32	32	C	404	414	Right-handed alpha
Helix 33	33	C	484	498	Right-handed alpha
Helix 34	34	D	237	242	Right-handed alpha
Helix 35	35	D	245	249	Right-handed 310
Helix 36	36	D	259	270	Right-handed alpha
Helix 37	37	D	354	357	Right-handed 310
Helix 38	38	D	376	382	Right-handed alpha
Helix 39	39	D	384	389	Right-handed alpha
Helix 40	40	D	392	397	Right-handed 310
Helix 41	41	D	398	403	Right-handed 310
Helix 42	42	D	404	415	Right-handed alpha
Helix 43	43	D	484	498	Right-handed alpha

There are 14 sheets in PDB entry 4DJ2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	200	first strand
Strand 2	A	314	325	parallel
Strand 3	A	334	343	anti-parallel
Strand 4	A	219	225	anti-parallel
Strand 5	A	231	234	anti-parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	200	first strand
Strand 2	A	314	325	parallel
Strand 3	A	297	301	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	370	373	first strand
Strand 2	A	359	364	anti-parallel
Strand 3	A	452	461	anti-parallel
Strand 4	A	440	445	anti-parallel
Strand 5	A	420	421	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	370	373	first strand
Strand 2	A	359	364	anti-parallel
Strand 3	A	452	461	anti-parallel
Strand 4	A	434	438	anti-parallel
Strand 5	A	425	428	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	201	first strand
Strand 2	B	314	326	parallel
Strand 3	B	334	343	anti-parallel
Strand 4	B	219	225	anti-parallel
Strand 5	B	231	234	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	201	first strand
Strand 2	B	314	326	parallel
Strand 3	B	297	301	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	370	373	first strand
Strand 2	B	359	364	anti-parallel
Strand 3	B	452	461	anti-parallel
Strand 4	B	434	441	anti-parallel
Strand 5	B	420	428	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	370	373	first strand
Strand 2	B	359	364	anti-parallel
Strand 3	B	452	461	anti-parallel
Strand 4	B	444	445	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	231	234	first strand
Strand 2	C	219	224	anti-parallel
Strand 3	C	338	343	anti-parallel
Strand 4	C	314	321	anti-parallel
Strand 5	C	297	301	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	370	373	first strand
Strand 2	C	359	364	anti-parallel
Strand 3	C	452	461	anti-parallel
Strand 4	C	434	441	anti-parallel
Strand 5	C	420	428	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	370	373	first strand
Strand 2	C	359	364	anti-parallel
Strand 3	C	452	461	anti-parallel
Strand 4	C	444	445	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	233	234	first strand
Strand 2	D	219	223	anti-parallel
Strand 3	D	338	343	anti-parallel
Strand 4	D	314	321	anti-parallel
Strand 5	D	297	301	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	370	373	first strand
Strand 2	D	359	364	anti-parallel
Strand 3	D	452	463	anti-parallel
Strand 4	D	434	441	anti-parallel
Strand 5	D	420	428	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	370	373	first strand
Strand 2	D	359	364	anti-parallel
Strand 3	D	452	463	anti-parallel
Strand 4	D	444	445	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4DJ2

Analysis of interatomic Contacts of Structural Units in PDB entry:
4DJ2