Analysis of interatomic Contacts of Structural Units in PDB entry:
4DJ3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DJ3 entry

There are 2 chains in PDB entry 4DJ3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 104VAL 411
B
 ALA 119VAL 411
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 4DJ3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
121 126Right-handed alpha
Helix 2
2
A
149 154Right-handed alpha
Helix 3
3
A
157 163Right-handed alpha
Helix 4
4
A
164 170Right-handed 310
Helix 5
5
A
171 173Right-handed 310
Helix 6
6
A
174 182Right-handed alpha
Helix 7
7
A
264 267Right-handed 310
Helix 8
8
A
286 292Right-handed alpha
Helix 9
9
A
294 299Right-handed alpha
Helix 10
10
A
302 307Right-handed 310
Helix 11
11
A
313 325Right-handed alpha
Helix 12
12
A
393 407Right-handed alpha
Helix 13
13
B
166 170Right-handed 310
Helix 14
14
B
171 173Right-handed 310
Helix 15
15
B
174 182Right-handed alpha
Helix 16
16
B
264 267Right-handed 310
Helix 17
17
B
287 292Right-handed alpha
Helix 18
18
B
294 299Right-handed alpha
Helix 19
19
B
302 307Right-handed alpha
Helix 20
20
B
313 325Right-handed alpha
Helix 21
21
B
396 407Right-handed alpha
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There are 5 sheets in PDB entry 4DJ3. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 146first strand
Strand 2
A
131 137anti-parallel
Strand 3
A
245 253anti-parallel
Strand 4
A
224 234anti-parallel
Strand 5
A
208 212anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 283first strand
Strand 2
A
269 274anti-parallel
Strand 3
A
363 372anti-parallel
Strand 4
A
345 356anti-parallel
Strand 5
A
331 332anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 283first strand
Strand 2
A
269 274anti-parallel
Strand 3
A
363 372anti-parallel
Strand 4
A
345 356anti-parallel
Strand 5
A
336 339anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 146first strand
Strand 2
B
131 136anti-parallel
Strand 3
B
247 253anti-parallel
Strand 4
B
225 232anti-parallel
Strand 5
B
208 211anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
280 283first strand
Strand 2
B
269 274anti-parallel
Strand 3
B
363 372anti-parallel
Strand 4
B
345 356anti-parallel
Strand 5
B
336 339anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il