Analysis of interatomic Contacts of Structural Units in PDB entry:
4DJ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DJ4 entry

There are 2 chains in PDB entry 4DJ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 26GLY 291
B
 TRP 26PHE 290
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 4DJ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 40Right-handed alpha
Helix 2
2
A
43 54Right-handed alpha
Helix 3
3
A
55 59Right-handed 310
Helix 4
4
A
61 66Right-handed 310
Helix 5
5
A
67 73Right-handed alpha
Helix 6
6
A
74 86Right-handed 310
Helix 7
7
A
97 102Right-handed alpha
Helix 8
8
A
112 130Right-handed alpha
Helix 9
9
A
137 154Right-handed alpha
Helix 10
10
A
155 159Right-handed 310
Helix 11
11
A
180 186Right-handed alpha
Helix 12
12
A
186 198Right-handed alpha
Helix 13
13
A
200 214Right-handed alpha
Helix 14
14
A
220 226Right-handed alpha
Helix 15
15
A
229 248Right-handed alpha
Helix 16
16
A
260 291Right-handed alpha
Helix 17
17
B
27 40Right-handed alpha
Helix 18
18
B
43 54Right-handed alpha
Helix 19
19
B
55 59Right-handed 310
Helix 20
20
B
61 66Right-handed 310
Helix 21
21
B
67 73Right-handed alpha
Helix 22
22
B
74 86Right-handed 310
Helix 23
23
B
97 102Right-handed alpha
Helix 24
24
B
112 126Right-handed alpha
Helix 25
25
B
137 154Right-handed alpha
Helix 26
26
B
155 159Right-handed 310
Helix 27
27
B
180 186Right-handed alpha
Helix 28
28
B
186 198Right-handed alpha
Helix 29
29
B
200 212Right-handed alpha
Helix 30
30
B
229 249Right-handed alpha
Helix 31
31
B
260 290Right-handed alpha
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There are 2 sheets in PDB entry 4DJ4. Click on sheet of interest to get list of strands forming it: A, B,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 179first strand
Strand 2
A
170 173anti-parallel
Strand 3
A
258 259parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 179first strand
Strand 2
B
170 173anti-parallel
Strand 3
B
258 259parallel
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