Analysis of interatomic Contacts of Structural Units in PDB entry:
4DJ6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DJ6 entry

There are 5 chains in PDB entry 4DJ6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1GLU 317
B
 GLY 1ARG 170
C
 ASP 1GLU 317
D
 GLY 1ILE 171
E
 GLY 0MET 312
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 4DJ6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
57 62Right-handed alpha
Helix 2
2
A
63 70Right-handed 310
Helix 3
3
A
94 104Right-handed alpha
Helix 4
4
A
178 187Right-handed alpha
Helix 5
5
B
37 56Right-handed alpha
Helix 6
6
B
74 127Right-handed alpha
Helix 7
7
B
145 154Right-handed alpha
Helix 8
8
B
162 169Right-handed alpha
Helix 9
9
C
57 62Right-handed alpha
Helix 10
10
C
63 70Right-handed 310
Helix 11
11
C
94 104Right-handed alpha
Helix 12
12
C
178 187Right-handed alpha
Helix 13
13
D
38 56Right-handed alpha
Helix 14
14
D
74 127Right-handed alpha
Helix 15
15
D
145 154Right-handed alpha
Helix 16
16
D
162 169Right-handed alpha
Helix 17
17
E
57 62Right-handed alpha
Helix 18
18
E
63 70Right-handed 310
Helix 19
19
E
94 104Right-handed alpha
Helix 20
20
E
178 187Right-handed alpha
Helix 21
21
F
37 56Right-handed alpha
Helix 22
22
F
74 127Right-handed alpha
Helix 23
23
F
145 154Right-handed alpha
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There are 33 sheets in PDB entry 4DJ6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 36first strand
Strand 2
B
22 27anti-parallel
Strand 3
A
2 7anti-parallel
Strand 4
B
137 140anti-parallel
Strand 5
B
130 132anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 17first strand
Strand 2
A
22 26anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 31first strand
Strand 2
A
307 309anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 34first strand
Strand 2
A
286 287parallel
Strand 3
A
299 300parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 42first strand
Strand 2
A
265 266parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 50first strand
Strand 2
A
76 79parallel
Strand 3
A
257 260parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 92first strand
Strand 2
A
220 228parallel
Strand 3
A
167 175anti-parallel
Strand 4
A
247 251anti-parallel
Strand 5
A
108 112anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 92first strand
Strand 2
A
220 228parallel
Strand 3
A
167 175anti-parallel
Strand 4
A
242 245anti-parallel
Strand 5
A
140 142anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 130first strand
Strand 2
A
134 135anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 160first strand
Strand 2
A
233 238anti-parallel
Strand 3
A
193 196anti-parallel
Strand 4
A
201 204anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 279first strand
Strand 2
A
273 275anti-parallel
Strand 3
A
294 295anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
32 36first strand
Strand 2
D
22 27anti-parallel
Strand 3
C
2 7anti-parallel
Strand 4
D
137 140anti-parallel
Strand 5
D
130 132anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
14 17first strand
Strand 2
C
22 26anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
29 31first strand
Strand 2
C
307 309anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 34first strand
Strand 2
C
286 287parallel
Strand 3
C
299 300parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
41 42first strand
Strand 2
C
265 266parallel
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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
48 50first strand
Strand 2
C
76 79parallel
Strand 3
C
257 260parallel
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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
90 92first strand
Strand 2
C
220 228parallel
Strand 3
C
167 175anti-parallel
Strand 4
C
247 251anti-parallel
Strand 5
C
108 112anti-parallel
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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
90 92first strand
Strand 2
C
220 228parallel
Strand 3
C
167 175anti-parallel
Strand 4
C
242 245anti-parallel
Strand 5
C
140 142anti-parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
126 130first strand
Strand 2
C
134 135anti-parallel
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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
155 160first strand
Strand 2
C
233 238anti-parallel
Strand 3
C
193 196anti-parallel
Strand 4
C
201 204anti-parallel
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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
278 279first strand
Strand 2
C
273 275anti-parallel
Strand 3
C
294 295anti-parallel
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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
32 36first strand
Strand 2
F
22 27anti-parallel
Strand 3
E
1 7anti-parallel
Strand 4
F
137 140anti-parallel
Strand 5
F
130 132anti-parallel
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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
14 17first strand
Strand 2
E
22 26anti-parallel
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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
29 31first strand
Strand 2
E
307 309anti-parallel
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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
33 34first strand
Strand 2
E
286 287parallel
Strand 3
E
299 300parallel
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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
41 42first strand
Strand 2
E
265 266parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
48 50first strand
Strand 2
E
76 79parallel
Strand 3
E
257 260parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
90 92first strand
Strand 2
E
220 228parallel
Strand 3
E
167 175anti-parallel
Strand 4
E
247 251anti-parallel
Strand 5
E
108 112anti-parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
90 92first strand
Strand 2
E
220 228parallel
Strand 3
E
167 175anti-parallel
Strand 4
E
242 245anti-parallel
Strand 5
E
140 142anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
126 130first strand
Strand 2
E
134 135anti-parallel
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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
155 160first strand
Strand 2
E
233 238anti-parallel
Strand 3
E
193 196anti-parallel
Strand 4
E
201 204anti-parallel
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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
278 279first strand
Strand 2
E
273 275anti-parallel
Strand 3
E
294 295anti-parallel
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