Analysis of interatomic Contacts of Structural Units in PDB entry:
4DJ9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DJ9 entry

There are 2 chains in PDB entry 4DJ9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 3TRP 253
B
 VAL 2078LYS 2099
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 4DJ9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 30Right-handed alpha
Helix 2
2
A
40 65Right-handed alpha
Helix 3
3
A
67 98Right-handed alpha
Helix 4
4
A
101 148Right-handed alpha
Helix 5
5
A
149 151Right-handed 310
Helix 6
6
A
153 182Right-handed alpha
Helix 7
7
A
184 215Right-handed alpha
Helix 8
8
A
222 249Right-handed alpha
Helix 9
9
B
2079 2099Right-handed alpha
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There are no sheets in PDB entry 4DJ9
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il