Analysis of interatomic Contacts of Structural Units in PDB entry:
4DJA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DJA entry

There is 1 chain in PDB entry 4DJA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2HIS 513
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 4DJA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 20Right-handed 310
Helix 2
2
A
34 40Right-handed alpha
Helix 3
3
A
44 65Right-handed alpha
Helix 4
4
A
82 95Right-handed alpha
Helix 5
5
A
106 115Right-handed alpha
Helix 6
6
A
115 121Right-handed alpha
Helix 7
7
A
135 144Right-handed alpha
Helix 8
8
A
150 163Right-handed alpha
Helix 9
9
A
173 175Right-handed 310
Helix 10
10
A
201 215Right-handed alpha
Helix 11
11
A
230 245Right-handed alpha
Helix 12
12
A
246 249Right-handed 310
Helix 13
13
A
268 273Right-handed alpha
Helix 14
14
A
278 292Right-handed alpha
Helix 15
15
A
296 309Right-handed alpha
Helix 16
16
A
309 322Right-handed alpha
Helix 17
17
A
323 328Right-handed 310
Helix 18
18
A
339 344Right-handed alpha
Helix 19
19
A
348 362Right-handed alpha
Helix 20
20
A
365 372Right-handed alpha
Helix 21
21
A
372 380Right-handed alpha
Helix 22
22
A
383 395Right-handed alpha
Helix 23
23
A
399 409Right-handed alpha
Helix 24
24
A
427 435Right-handed alpha
Helix 25
25
A
436 441Right-handed 310
Helix 26
26
A
454 467Right-handed alpha
Helix 27
27
A
467 472Right-handed alpha
Helix 28
28
A
474 476Right-handed 310
Helix 29
29
A
477 486Right-handed alpha
Helix 30
30
A
488 513Right-handed alpha
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There are 2 sheets in PDB entry 4DJA. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 72first strand
Strand 2
A
28 32parallel
Strand 3
A
3 6parallel
Strand 4
A
98 102parallel
Strand 5
A
123 127parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 167first strand
Strand 2
A
170 171anti-parallel
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