Analysis of interatomic Contacts of Structural Units in PDB entry:
4DJD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DJD entry

There are 5 chains in PDB entry 4DJD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 262
B
 MET 1ARG 262
C
 PRO 2ALA 442
D
 MET 1TYR 323
E
 PRO 2LEU 66
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are107 helices in PDB entry 4DJD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 21Right-handed alpha
Helix 2
2
A
23 38Right-handed alpha
Helix 3
3
A
52 65Right-handed alpha
Helix 4
4
A
78 87Right-handed alpha
Helix 5
5
A
101 116Right-handed alpha
Helix 6
6
A
132 151Right-handed alpha
Helix 7
7
A
153 155Right-handed 310
Helix 8
8
A
171 183Right-handed alpha
Helix 9
9
A
184 186Right-handed 310
Helix 10
10
A
198 202Right-handed 310
Helix 11
11
A
206 221Right-handed alpha
Helix 12
12
A
232 246Right-handed alpha
Helix 13
13
A
254 261Right-handed alpha
Helix 14
14
B
12 21Right-handed alpha
Helix 15
15
B
23 38Right-handed alpha
Helix 16
16
B
52 66Right-handed alpha
Helix 17
17
B
78 88Right-handed alpha
Helix 18
18
B
101 116Right-handed alpha
Helix 19
19
B
132 150Right-handed alpha
Helix 20
20
B
153 155Right-handed 310
Helix 21
21
B
171 184Right-handed alpha
Helix 22
22
B
198 202Right-handed 310
Helix 23
23
B
206 221Right-handed alpha
Helix 24
24
B
232 246Right-handed alpha
Helix 25
25
B
254 261Right-handed alpha
Helix 26
26
C
4 10Right-handed alpha
Helix 27
27
C
24 35Right-handed alpha
Helix 28
28
C
38 42Right-handed 310
Helix 29
29
C
46 56Right-handed alpha
Helix 30
30
C
82 86Right-handed 310
Helix 31
31
C
103 115Right-handed alpha
Helix 32
32
C
140 152Right-handed alpha
Helix 33
33
C
164 173Right-handed alpha
Helix 34
34
C
174 179Right-handed 310
Helix 35
35
C
189 200Right-handed alpha
Helix 36
36
C
210 224Right-handed alpha
Helix 37
37
C
237 255Right-handed alpha
Helix 38
38
C
257 261Right-handed 310
Helix 39
39
C
272 286Right-handed alpha
Helix 40
40
C
297 312Right-handed alpha
Helix 41
41
C
343 352Right-handed alpha
Helix 42
42
C
372 379Right-handed alpha
Helix 43
43
C
383 394Right-handed alpha
Helix 44
44
C
395 399Right-handed 310
Helix 45
45
C
408 412Right-handed 310
Helix 46
46
C
413 423Right-handed alpha
Helix 47
47
C
432 434Right-handed 310
Helix 48
48
C
435 442Right-handed alpha
Helix 49
49
D
22 26Right-handed 310
Helix 50
50
D
44 48Right-handed 310
Helix 51
51
D
68 73Right-handed alpha
Helix 52
52
D
74 76Right-handed 310
Helix 53
53
D
81 92Right-handed alpha
Helix 54
54
D
103 106Right-handed 310
Helix 55
55
D
113 128Right-handed alpha
Helix 56
56
D
139 154Right-handed alpha
Helix 57
57
D
169 180Right-handed alpha
Helix 58
58
D
190 203Right-handed alpha
Helix 59
59
D
207 209Right-handed 310
Helix 60
60
D
223 241Right-handed alpha
Helix 61
61
D
242 246Right-handed 310
Helix 62
62
D
253 259Right-handed alpha
Helix 63
63
D
260 265Right-handed alpha
Helix 64
64
D
270 274Right-handed 310
Helix 65
65
D
275 293Right-handed alpha
Helix 66
66
D
303 318Right-handed alpha
Helix 67
67
E
4 10Right-handed alpha
Helix 68
68
E
24 35Right-handed alpha
Helix 69
69
E
38 42Right-handed 310
Helix 70
70
E
47 58Right-handed alpha
Helix 71
71
E
68 72Right-handed 310
Helix 72
72
E
82 86Right-handed 310
Helix 73
73
E
103 116Right-handed alpha
Helix 74
74
E
140 154Right-handed alpha
Helix 75
75
E
164 176Right-handed alpha
Helix 76
76
E
177 179Right-handed 310
Helix 77
77
E
189 201Right-handed alpha
Helix 78
78
E
210 224Right-handed alpha
Helix 79
79
E
237 256Right-handed alpha
Helix 80
80
E
257 261Right-handed 310
Helix 81
81
E
272 286Right-handed alpha
Helix 82
82
E
297 312Right-handed alpha
Helix 83
83
E
343 357Right-handed alpha
Helix 84
84
E
372 377Right-handed alpha
Helix 85
85
E
383 394Right-handed alpha
Helix 86
86
E
408 414Right-handed 310
Helix 87
87
E
415 423Right-handed alpha
Helix 88
88
E
432 434Right-handed 310
Helix 89
89
E
435 442Right-handed alpha
Helix 90
90
F
22 26Right-handed 310
Helix 91
91
F
44 48Right-handed 310
Helix 92
92
F
68 73Right-handed alpha
Helix 93
93
F
74 76Right-handed 310
Helix 94
94
F
81 92Right-handed alpha
Helix 95
95
F
103 106Right-handed 310
Helix 96
96
F
113 128Right-handed alpha
Helix 97
97
F
139 154Right-handed alpha
Helix 98
98
F
169 180Right-handed alpha
Helix 99
99
F
190 203Right-handed alpha
Helix 100
100
F
207 209Right-handed 310
Helix 101
101
F
223 241Right-handed alpha
Helix 102
102
F
242 246Right-handed 310
Helix 103
103
F
253 258Right-handed alpha
Helix 104
104
F
259 264Right-handed 310
Helix 105
105
F
270 274Right-handed 310
Helix 106
106
F
275 293Right-handed alpha
Helix 107
107
F
303 318Right-handed alpha
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There are 15 sheets in PDB entry 4DJD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 5first strand
Strand 2
A
41 45parallel
Strand 3
A
71 75parallel
Strand 4
A
93 98parallel
Strand 5
A
118 122parallel
Strand 6
A
157 160parallel
Strand 7
A
192 196parallel
Strand 8
A
225 228parallel
Strand 9
A
2 5parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 5first strand
Strand 2
B
41 44parallel
Strand 3
B
71 75parallel
Strand 4
B
93 98parallel
Strand 5
B
118 122parallel
Strand 6
B
157 160parallel
Strand 7
B
192 196parallel
Strand 8
B
225 228parallel
Strand 9
B
2 5parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
63 66first strand
Strand 2
C
73 76anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
229 232first strand
Strand 2
C
204 207parallel
Strand 3
C
181 185parallel
Strand 4
C
157 161parallel
Strand 5
C
130 134parallel
Strand 6
C
93 99parallel
Strand 7
C
290 293parallel
Strand 8
C
265 267parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
119 121first strand
Strand 2
C
124 126anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
326 327first strand
Strand 2
C
362 365anti-parallel
Strand 3
C
337 340parallel
Strand 4
C
404 407parallel
Strand 5
C
425 428parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
16 19first strand
Strand 2
D
33 36anti-parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
211 214first strand
Strand 2
D
182 186parallel
Strand 3
D
160 164parallel
Strand 4
D
132 135parallel
Strand 5
D
97 101parallel
Strand 6
D
55 61parallel
Strand 7
D
298 301parallel
Strand 8
D
250 252parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
63 66first strand
Strand 2
E
73 76anti-parallel
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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
229 232first strand
Strand 2
E
204 207parallel
Strand 3
E
181 185parallel
Strand 4
E
157 161parallel
Strand 5
E
130 134parallel
Strand 6
E
93 99parallel
Strand 7
E
290 293parallel
Strand 8
E
265 267parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
118 121first strand
Strand 2
E
124 127anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
325 328first strand
Strand 2
E
361 366anti-parallel
Strand 3
E
337 341parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
404 407first strand
Strand 2
E
425 428parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
16 19first strand
Strand 2
F
33 36anti-parallel
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There are 8 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
211 214first strand
Strand 2
F
182 186parallel
Strand 3
F
160 164parallel
Strand 4
F
132 135parallel
Strand 5
F
97 101parallel
Strand 6
F
55 61parallel
Strand 7
F
298 301parallel
Strand 8
F
250 252parallel
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