Analysis of interatomic Contacts of Structural Units in PDB entry:
4DJK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DJK entry

There are 2 chains in PDB entry 4DJK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 12PRO 501
B
 GLN 12PRO 501
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 4DJK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 22Right-handed alpha
Helix 2
2
A
23 27Right-handed 310
Helix 3
3
A
28 30Right-handed 310
Helix 4
4
A
31 37Right-handed alpha
Helix 5
5
A
40 53Right-handed alpha
Helix 6
6
A
53 66Right-handed alpha
Helix 7
7
A
75 84Right-handed alpha
Helix 8
8
A
84 103Right-handed alpha
Helix 9
9
A
103 116Right-handed alpha
Helix 10
10
A
120 124Right-handed 310
Helix 11
11
A
128 147Right-handed alpha
Helix 12
12
A
151 156Right-handed alpha
Helix 13
13
A
156 163Right-handed alpha
Helix 14
14
A
164 179Right-handed alpha
Helix 15
15
A
206 215Right-handed alpha
Helix 16
16
A
216 225Right-handed 310
Helix 17
17
A
233 258Right-handed alpha
Helix 18
18
A
270 280Right-handed alpha
Helix 19
19
A
288 309Right-handed alpha
Helix 20
20
A
310 316Right-handed alpha
Helix 21
21
A
317 322Right-handed alpha
Helix 22
22
A
323 325Right-handed 310
Helix 23
23
A
339 358Right-handed alpha
Helix 24
24
A
361 396Right-handed alpha
Helix 25
25
A
409 430Right-handed alpha
Helix 26
26
A
444 466Right-handed alpha
Helix 27
27
B
14 22Right-handed alpha
Helix 28
28
B
31 37Right-handed alpha
Helix 29
29
B
40 53Right-handed alpha
Helix 30
30
B
53 66Right-handed alpha
Helix 31
31
B
75 83Right-handed alpha
Helix 32
32
B
85 118Right-handed alpha
Helix 33
33
B
120 124Right-handed 310
Helix 34
34
B
126 147Right-handed alpha
Helix 35
35
B
151 163Right-handed alpha
Helix 36
36
B
164 179Right-handed alpha
Helix 37
37
B
206 215Right-handed alpha
Helix 38
38
B
221 225Right-handed 310
Helix 39
39
B
233 258Right-handed alpha
Helix 40
40
B
269 280Right-handed alpha
Helix 41
41
B
288 309Right-handed alpha
Helix 42
42
B
310 316Right-handed alpha
Helix 43
43
B
317 322Right-handed alpha
Helix 44
44
B
323 325Right-handed 310
Helix 45
45
B
337 358Right-handed alpha
Helix 46
46
B
364 396Right-handed alpha
Helix 47
47
B
409 430Right-handed alpha
Helix 48
48
B
444 465Right-handed alpha
Helix 49
49
B
495 499Right-handed 310
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There are no sheets in PDB entry 4DJK
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il