Analysis of interatomic Contacts of Structural Units in PDB entry:
4DJM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4DJM entry

There are 7 chains in PDB entry 4DJM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 20	LEU 237
B	GLU 16	LEU 237
C	THR 17	LEU 237
D	GLU 16	LYS 238
E	ALA 19	LEU 237
F	GLU 16	LEU 237
G	THR 17	ARG 90

There are 10 helices in PDB entry 4DJM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	155	160	Right-handed alpha
Helix 2	2	A	161	163	Right-handed 310
Helix 3	3	B	155	163	Right-handed 310
Helix 4	4	C	155	163	Right-handed 310
Helix 5	5	D	155	160	Right-handed alpha
Helix 6	6	D	161	163	Right-handed 310
Helix 7	7	E	155	163	Right-handed 310
Helix 8	8	F	155	163	Right-handed 310
Helix 9	9	G	155	163	Right-handed 310
Helix 10	10	H	155	163	Right-handed 310

There are 36 sheets in PDB entry 4DJM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	78	first strand
Strand 2	B	52	59	anti-parallel
Strand 3	B	101	110	anti-parallel
Strand 4	B	131	147	anti-parallel
Strand 5	A	132	147	anti-parallel
Strand 6	A	101	110	anti-parallel
Strand 7	A	52	59	anti-parallel
Strand 8	A	75	78	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	33	first strand
Strand 2	B	131	147	parallel
Strand 3	A	132	147	anti-parallel
Strand 4	A	30	33	parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	23	first strand
Strand 2	B	131	147	parallel
Strand 3	A	132	147	anti-parallel
Strand 4	A	21	22	parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	26	first strand
Strand 2	A	40	46	anti-parallel
Strand 3	A	82	90	anti-parallel
Strand 4	A	69	72	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	168	first strand
Strand 2	A	171	175	anti-parallel
Strand 3	A	205	209	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	193	first strand
Strand 2	A	184	189	anti-parallel
Strand 3	A	218	222	anti-parallel
Strand 4	A	233	235	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	26	first strand
Strand 2	B	40	45	anti-parallel
Strand 3	B	83	90	anti-parallel
Strand 4	B	69	72	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	166	first strand
Strand 2	B	172	176	anti-parallel
Strand 3	B	204	208	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	193	first strand
Strand 2	B	184	189	anti-parallel
Strand 3	B	218	222	anti-parallel
Strand 4	B	233	235	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	22	first strand
Strand 2	C	132	138	parallel
Strand 3	D	132	138	anti-parallel
Strand 4	D	17	22	parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	26	first strand
Strand 2	C	40	46	anti-parallel
Strand 3	C	82	90	anti-parallel
Strand 4	C	69	72	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	33	first strand
Strand 2	C	140	147	parallel
Strand 3	C	101	110	anti-parallel
Strand 4	C	52	59	anti-parallel
Strand 5	C	75	78	anti-parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	166	first strand
Strand 2	C	172	176	anti-parallel
Strand 3	C	204	208	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	192	193	first strand
Strand 2	C	184	189	anti-parallel
Strand 3	C	218	222	anti-parallel
Strand 4	C	233	235	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	25	26	first strand
Strand 2	D	40	45	anti-parallel
Strand 3	D	83	90	anti-parallel
Strand 4	D	69	72	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	33	first strand
Strand 2	D	140	147	parallel
Strand 3	D	101	110	anti-parallel
Strand 4	D	52	59	anti-parallel
Strand 5	D	75	78	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	164	168	first strand
Strand 2	D	171	176	anti-parallel
Strand 3	D	204	209	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	192	193	first strand
Strand 2	D	184	189	anti-parallel
Strand 3	D	218	222	anti-parallel
Strand 4	D	233	235	anti-parallel

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There are 8 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	75	78	first strand
Strand 2	F	52	59	anti-parallel
Strand 3	F	101	110	anti-parallel
Strand 4	F	131	147	anti-parallel
Strand 5	E	131	147	anti-parallel
Strand 6	E	101	110	anti-parallel
Strand 7	E	52	59	anti-parallel
Strand 8	E	75	78	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	33	first strand
Strand 2	F	131	147	parallel
Strand 3	E	131	147	anti-parallel
Strand 4	E	30	33	parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	17	22	first strand
Strand 2	F	131	147	parallel
Strand 3	E	131	147	anti-parallel
Strand 4	E	20	22	parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	25	26	first strand
Strand 2	E	40	46	anti-parallel
Strand 3	E	82	90	anti-parallel
Strand 4	E	69	72	anti-parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	164	167	first strand
Strand 2	E	171	176	anti-parallel
Strand 3	E	204	209	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	192	193	first strand
Strand 2	E	184	189	anti-parallel
Strand 3	E	218	222	anti-parallel
Strand 4	E	233	235	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	25	26	first strand
Strand 2	F	40	45	anti-parallel
Strand 3	F	83	90	anti-parallel
Strand 4	F	69	72	anti-parallel

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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	164	168	first strand
Strand 2	F	171	176	anti-parallel
Strand 3	F	204	209	anti-parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	192	193	first strand
Strand 2	F	184	189	anti-parallel
Strand 3	F	218	222	anti-parallel
Strand 4	F	233	235	anti-parallel

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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	18	23	first strand
Strand 2	G	132	147	parallel
Strand 3	G	101	110	anti-parallel
Strand 4	G	52	59	anti-parallel
Strand 5	G	75	78	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	30	33	first strand
Strand 2	G	132	147	parallel
Strand 3	H	132	138	anti-parallel
Strand 4	H	17	22	parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	25	26	first strand
Strand 2	G	40	46	anti-parallel
Strand 3	G	82	90	anti-parallel
Strand 4	G	69	72	anti-parallel

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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	164	168	first strand
Strand 2	G	171	176	anti-parallel
Strand 3	G	204	209	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	192	193	first strand
Strand 2	G	184	189	anti-parallel
Strand 3	G	218	222	anti-parallel
Strand 4	G	233	235	anti-parallel

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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	25	26	first strand
Strand 2	H	40	45	anti-parallel
Strand 3	H	83	90	anti-parallel
Strand 4	H	69	72	anti-parallel

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There are 5 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	30	33	first strand
Strand 2	H	140	147	parallel
Strand 3	H	101	110	anti-parallel
Strand 4	H	52	59	anti-parallel
Strand 5	H	75	78	anti-parallel

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There are 3 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	164	166	first strand
Strand 2	H	172	176	anti-parallel
Strand 3	H	204	208	anti-parallel

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There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	192	193	first strand
Strand 2	H	184	189	anti-parallel
Strand 3	H	218	222	anti-parallel
Strand 4	H	233	235	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4DJM

Analysis of interatomic Contacts of Structural Units in PDB entry:
4DJM