Analysis of interatomic Contacts of Structural Units in PDB entry:
4DJZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4DJZ entry

There are 6 chains in PDB entry 4DJZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 297	LYS 444
B	ILE 449	ASN 699
C	THR 297	LYS 444
D	ILE 449	ASN 699
H	VAL 5	GLN 38
I	THR 6	GLN 38

There are 12 helices in PDB entry 4DJZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	406	408	Right-handed 310
Helix 2	2	B	488	493	Right-handed 310
Helix 3	3	B	504	508	Right-handed 310
Helix 4	4	B	510	514	Right-handed 310
Helix 5	5	B	592	596	Right-handed 310
Helix 6	6	B	610	619	Right-handed alpha
Helix 7	7	B	687	696	Right-handed alpha
Helix 8	8	C	406	408	Right-handed 310
Helix 9	9	D	490	493	Right-handed 310
Helix 10	10	D	592	596	Right-handed 310
Helix 11	11	D	610	619	Right-handed alpha
Helix 12	12	D	684	695	Right-handed alpha

There are 16 sheets in PDB entry 4DJZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	301	first strand
Strand 2	A	319	320	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	313	first strand
Strand 2	A	324	328	anti-parallel
Strand 3	A	344	348	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	342	first strand
Strand 2	A	333	337	anti-parallel
Strand 3	A	361	364	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	376	380	first strand
Strand 2	A	392	397	anti-parallel
Strand 3	A	411	415	anti-parallel
Strand 4	A	419	421	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	402	404	first strand
Strand 2	A	432	434	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	454	first strand
Strand 2	B	602	609	anti-parallel
Strand 3	B	583	588	anti-parallel
Strand 4	B	649	654	anti-parallel
Strand 5	B	659	669	anti-parallel
Strand 6	H	29	32	anti-parallel
Strand 7	H	18	22	anti-parallel
Strand 8	H	12	15	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	454	first strand
Strand 2	B	602	609	anti-parallel
Strand 3	B	629	632	anti-parallel
Strand 4	B	679	683	anti-parallel
Strand 5	B	659	669	anti-parallel
Strand 6	H	29	32	anti-parallel
Strand 7	H	18	22	anti-parallel
Strand 8	H	12	15	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	531	533	first strand
Strand 2	B	515	518	anti-parallel
Strand 3	B	463	467	anti-parallel
Strand 4	B	473	480	anti-parallel
Strand 5	B	484	487	anti-parallel
Strand 6	B	554	558	anti-parallel
Strand 7	B	535	540	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	324	328	first strand
Strand 2	C	344	348	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	341	342	first strand
Strand 2	C	333	336	anti-parallel
Strand 3	C	363	364	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	377	first strand
Strand 2	C	396	397	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	392	394	first strand
Strand 2	C	411	414	anti-parallel
Strand 3	C	420	421	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	402	404	first strand
Strand 2	C	432	434	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	453	454	first strand
Strand 2	D	602	609	anti-parallel
Strand 3	D	583	588	anti-parallel
Strand 4	D	649	653	anti-parallel
Strand 5	D	660	669	anti-parallel
Strand 6	I	29	32	anti-parallel
Strand 7	I	18	22	anti-parallel
Strand 8	I	12	15	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	453	454	first strand
Strand 2	D	602	609	anti-parallel
Strand 3	D	629	632	anti-parallel
Strand 4	D	679	683	anti-parallel
Strand 5	D	660	669	anti-parallel
Strand 6	I	29	32	anti-parallel
Strand 7	I	18	22	anti-parallel
Strand 8	I	12	15	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	531	533	first strand
Strand 2	D	514	518	anti-parallel
Strand 3	D	463	468	anti-parallel
Strand 4	D	473	480	anti-parallel
Strand 5	D	484	488	anti-parallel
Strand 6	D	553	558	anti-parallel
Strand 7	D	535	540	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4DJZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
4DJZ