Analysis of interatomic Contacts of Structural Units in PDB entry:
4DKD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DKD entry

There are 3 chains in PDB entry 4DKD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 32GLU 192
B
 GLU 33GLU 192
C
 ILE 20VAL 295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 4DKD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 45Right-handed alpha
Helix 2
2
A
46 55Right-handed alpha
Helix 3
3
A
67 71Right-handed 310
Helix 4
4
A
73 83Right-handed alpha
Helix 5
5
A
86 107Right-handed alpha
Helix 6
6
A
115 132Right-handed alpha
Helix 7
7
A
139 151Right-handed alpha
Helix 8
8
A
160 182Right-handed alpha
Helix 9
9
A
185 189Right-handed 310
Helix 10
10
B
34 45Right-handed alpha
Helix 11
11
B
46 55Right-handed alpha
Helix 12
12
B
67 71Right-handed 310
Helix 13
13
B
73 83Right-handed alpha
Helix 14
14
B
87 107Right-handed alpha
Helix 15
15
B
113 131Right-handed alpha
Helix 16
16
B
132 134Right-handed 310
Helix 17
17
B
139 151Right-handed alpha
Helix 18
18
B
160 181Right-handed alpha
Helix 19
19
C
75 79Right-handed 310
Helix 20
20
C
131 136Right-handed 310
Helix 21
21
C
144 146Right-handed 310
Helix 22
22
C
168 172Right-handed 310
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There are 11 sheets in PDB entry 4DKD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 66first strand
Strand 2
A
157 159anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 65first strand
Strand 2
B
158 159anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
22 24first strand
Strand 2
C
38 43anti-parallel
Strand 3
C
66 71anti-parallel
Strand 4
C
59 60anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
31 32first strand
Strand 2
C
100 101parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
82 84first strand
Strand 2
C
95 97anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
108 110first strand
Strand 2
C
127 129anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
114 118first strand
Strand 2
C
191 196parallel
Strand 3
C
174 179anti-parallel
Strand 4
C
138 142anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
114 118first strand
Strand 2
C
191 196parallel
Strand 3
C
174 179anti-parallel
Strand 4
C
186 187anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
123 124first strand
Strand 2
C
163 164anti-parallel
Strand 3
C
154 155anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
204 208first strand
Strand 2
C
220 228anti-parallel
Strand 3
C
256 265anti-parallel
Strand 4
C
249 253anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
234 236first strand
Strand 2
C
274 281anti-parallel
Strand 3
C
286 293anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il