Analysis of interatomic Contacts of Structural Units in PDB entry:
4DKL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DKL entry

There is 1 chain in PDB entry 4DKL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 65ILE 352
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 4DKL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
65 96Right-handed alpha
Helix 2
2
A
101 131Right-handed alpha
Helix 3
3
A
137 171Right-handed alpha
Helix 4
4
A
171 179Right-handed alpha
Helix 5
5
A
180 205Right-handed alpha
Helix 6
6
A
224 240Right-handed alpha
Helix 7
7
A
241 259Right-handed alpha
Helix 8
8
A
1002 1012Right-handed alpha
Helix 9
9
A
1039 1051Right-handed alpha
Helix 10
10
A
1059 1080Right-handed alpha
Helix 11
11
A
1083 1090Right-handed alpha
Helix 12
12
A
1092 1107Right-handed alpha
Helix 13
13
A
1107 1113Right-handed alpha
Helix 14
14
A
1114 1123Right-handed alpha
Helix 15
15
A
1125 1134Right-handed alpha
Helix 16
16
A
1136 1142Right-handed alpha
Helix 17
17
A
1142 1156Right-handed alpha
Helix 18
18
A
272 306Right-handed alpha
Helix 19
19
A
311 340Right-handed alpha
Helix 20
20
A
340 352Right-handed alpha
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There are 2 sheets in PDB entry 4DKL. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 211first strand
Strand 2
A
214 216anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1014 1019first strand
Strand 2
A
1025 1028anti-parallel
Strand 3
A
1031 1034anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il