Analysis of interatomic Contacts of Structural Units in PDB entry:
4DKS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DKS entry

There is 1 chain in PDB entry 4DKS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 174GLY 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 9 helices in PDB entry 4DKS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
180 195Right-handed alpha
Helix 2
2
A
195 209Right-handed alpha
Helix 3
3
A
211 219Right-handed alpha
Helix 4
4
A
221 225Right-handed 310
Helix 5
5
A
260 270Right-handed alpha
Helix 6
6
A
276 278Right-handed 310
Helix 7
7
A
279 291Right-handed alpha
Helix 8
8
A
294 302Right-handed alpha
Helix 9
9
A
316 334Right-handed alpha
Back to top of page

There is 1 sheet ( A) in PDB entry 4DKS.

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 227first strand
Strand 2
A
232 235anti-parallel
Strand 3
A
247 250anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il