Analysis of interatomic Contacts of Structural Units in PDB entry:
4DL1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4DL1 entry

There are 8 chains in PDB entry 4DL1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 1	ALA 104
C	VAL 113	SER 149
C	PRO 151	GLU 577
B	CYS 1	ALA 104
D	VAL 113	SER 149
D	PRO 151	ALA 578
E	CYS 1	ALA 104
G	VAL 113	GLU 116

There are213 helices in PDB entry 4DL1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	60	69	Right-handed alpha
Helix 2	2	A	72	76	Right-handed 310
Helix 3	3	A	84	98	Right-handed alpha
Helix 4	4	C	173	178	Right-handed alpha
Helix 5	5	C	180	187	Right-handed alpha
Helix 6	6	C	219	225	Right-handed alpha
Helix 7	7	C	243	268	Right-handed alpha
Helix 8	8	C	272	295	Right-handed alpha
Helix 9	9	C	296	310	Right-handed alpha
Helix 10	10	C	327	332	Right-handed alpha
Helix 11	11	C	333	339	Right-handed 310
Helix 12	12	C	362	364	Right-handed 310
Helix 13	13	C	367	374	Right-handed alpha
Helix 14	14	C	377	387	Right-handed alpha
Helix 15	15	C	399	404	Right-handed alpha
Helix 16	16	C	416	428	Right-handed alpha
Helix 17	17	C	432	440	Right-handed alpha
Helix 18	18	C	447	455	Right-handed alpha
Helix 19	19	C	457	469	Right-handed alpha
Helix 20	20	C	470	474	Right-handed 310
Helix 21	21	C	475	483	Right-handed alpha
Helix 22	22	C	492	509	Right-handed alpha
Helix 23	23	C	521	529	Right-handed alpha
Helix 24	24	C	532	540	Right-handed alpha
Helix 25	25	C	565	567	Right-handed 310
Helix 26	26	C	572	576	Right-handed 310
Helix 27	27	B	60	69	Right-handed alpha
Helix 28	28	B	72	76	Right-handed 310
Helix 29	29	B	84	98	Right-handed alpha
Helix 30	30	D	173	178	Right-handed alpha
Helix 31	31	D	180	187	Right-handed alpha
Helix 32	32	D	219	225	Right-handed 310
Helix 33	33	D	243	268	Right-handed alpha
Helix 34	34	D	272	296	Right-handed alpha
Helix 35	35	D	296	302	Right-handed alpha
Helix 36	36	D	302	310	Right-handed alpha
Helix 37	37	D	325	332	Right-handed alpha
Helix 38	38	D	333	339	Right-handed 310
Helix 39	39	D	362	364	Right-handed 310
Helix 40	40	D	367	374	Right-handed alpha
Helix 41	41	D	377	387	Right-handed alpha
Helix 42	42	D	399	404	Right-handed alpha
Helix 43	43	D	416	428	Right-handed alpha
Helix 44	44	D	432	440	Right-handed alpha
Helix 45	45	D	447	456	Right-handed alpha
Helix 46	46	D	457	469	Right-handed alpha
Helix 47	47	D	470	474	Right-handed 310
Helix 48	48	D	475	483	Right-handed alpha
Helix 49	49	D	492	509	Right-handed alpha
Helix 50	50	D	521	529	Right-handed alpha
Helix 51	51	D	532	541	Right-handed alpha
Helix 52	52	D	565	567	Right-handed 310
Helix 53	53	D	572	576	Right-handed 310
Helix 54	54	E	60	69	Right-handed alpha
Helix 55	55	E	72	76	Right-handed 310
Helix 56	56	E	84	98	Right-handed alpha
Helix 57	57	G	173	178	Right-handed alpha
Helix 58	58	G	180	188	Right-handed alpha
Helix 59	59	G	220	225	Right-handed alpha
Helix 60	60	G	243	268	Right-handed alpha
Helix 61	61	G	272	295	Right-handed alpha
Helix 62	62	G	296	302	Right-handed alpha
Helix 63	63	G	302	310	Right-handed alpha
Helix 64	64	G	325	332	Right-handed alpha
Helix 65	65	G	333	339	Right-handed 310
Helix 66	66	G	362	364	Right-handed 310
Helix 67	67	G	368	374	Right-handed alpha
Helix 68	68	G	377	387	Right-handed alpha
Helix 69	69	G	399	404	Right-handed alpha
Helix 70	70	G	416	428	Right-handed alpha
Helix 71	71	G	432	440	Right-handed alpha
Helix 72	72	G	447	456	Right-handed alpha
Helix 73	73	G	457	469	Right-handed alpha
Helix 74	74	G	470	474	Right-handed 310
Helix 75	75	G	475	483	Right-handed alpha
Helix 76	76	G	492	509	Right-handed alpha
Helix 77	77	G	521	530	Right-handed alpha
Helix 78	78	G	532	541	Right-handed alpha
Helix 79	79	G	565	567	Right-handed 310
Helix 80	80	G	572	576	Right-handed 310
Helix 81	81	F	60	69	Right-handed alpha
Helix 82	82	F	72	76	Right-handed 310
Helix 83	83	F	84	98	Right-handed alpha
Helix 84	84	H	173	178	Right-handed alpha
Helix 85	85	H	180	187	Right-handed alpha
Helix 86	86	H	243	268	Right-handed alpha
Helix 87	87	H	272	295	Right-handed alpha
Helix 88	88	H	296	310	Right-handed alpha
Helix 89	89	H	327	332	Right-handed alpha
Helix 90	90	H	333	339	Right-handed 310
Helix 91	91	H	362	364	Right-handed 310
Helix 92	92	H	367	374	Right-handed alpha
Helix 93	93	H	377	387	Right-handed alpha
Helix 94	94	H	399	404	Right-handed alpha
Helix 95	95	H	407	411	Right-handed 310
Helix 96	96	H	416	428	Right-handed alpha
Helix 97	97	H	432	440	Right-handed alpha
Helix 98	98	H	447	456	Right-handed alpha
Helix 99	99	H	457	469	Right-handed alpha
Helix 100	100	H	470	474	Right-handed 310
Helix 101	101	H	475	483	Right-handed alpha
Helix 102	102	H	492	509	Right-handed alpha
Helix 103	103	H	521	529	Right-handed alpha
Helix 104	104	H	532	541	Right-handed alpha
Helix 105	105	H	565	567	Right-handed 310
Helix 106	106	H	572	576	Right-handed 310
Helix 107	107	I	60	69	Right-handed alpha
Helix 108	108	I	72	76	Right-handed 310
Helix 109	109	I	84	98	Right-handed alpha
Helix 110	110	K	173	178	Right-handed alpha
Helix 111	111	K	180	187	Right-handed alpha
Helix 112	112	K	220	225	Right-handed alpha
Helix 113	113	K	243	268	Right-handed alpha
Helix 114	114	K	272	295	Right-handed alpha
Helix 115	115	K	295	302	Right-handed alpha
Helix 116	116	K	302	310	Right-handed alpha
Helix 117	117	K	325	332	Right-handed alpha
Helix 118	118	K	333	339	Right-handed 310
Helix 119	119	K	362	364	Right-handed 310
Helix 120	120	K	367	374	Right-handed alpha
Helix 121	121	K	376	386	Right-handed alpha
Helix 122	122	K	399	404	Right-handed alpha
Helix 123	123	K	407	411	Right-handed 310
Helix 124	124	K	416	428	Right-handed alpha
Helix 125	125	K	432	440	Right-handed alpha
Helix 126	126	K	447	455	Right-handed alpha
Helix 127	127	K	457	469	Right-handed alpha
Helix 128	128	K	470	474	Right-handed 310
Helix 129	129	K	475	483	Right-handed alpha
Helix 130	130	K	492	509	Right-handed alpha
Helix 131	131	K	521	529	Right-handed alpha
Helix 132	132	K	532	541	Right-handed alpha
Helix 133	133	K	565	567	Right-handed 310
Helix 134	134	K	572	576	Right-handed 310
Helix 135	135	J	60	69	Right-handed alpha
Helix 136	136	J	72	76	Right-handed 310
Helix 137	137	J	84	98	Right-handed alpha
Helix 138	138	L	173	178	Right-handed alpha
Helix 139	139	L	180	187	Right-handed alpha
Helix 140	140	L	219	224	Right-handed alpha
Helix 141	141	L	243	268	Right-handed alpha
Helix 142	142	L	272	295	Right-handed alpha
Helix 143	143	L	296	310	Right-handed alpha
Helix 144	144	L	325	332	Right-handed alpha
Helix 145	145	L	333	339	Right-handed 310
Helix 146	146	L	362	364	Right-handed 310
Helix 147	147	L	368	374	Right-handed alpha
Helix 148	148	L	377	387	Right-handed alpha
Helix 149	149	L	399	404	Right-handed alpha
Helix 150	150	L	416	428	Right-handed alpha
Helix 151	151	L	432	441	Right-handed alpha
Helix 152	152	L	447	456	Right-handed alpha
Helix 153	153	L	457	469	Right-handed alpha
Helix 154	154	L	470	474	Right-handed 310
Helix 155	155	L	475	483	Right-handed alpha
Helix 156	156	L	492	509	Right-handed alpha
Helix 157	157	L	521	529	Right-handed alpha
Helix 158	158	L	532	541	Right-handed alpha
Helix 159	159	L	565	567	Right-handed 310
Helix 160	160	L	572	576	Right-handed 310
Helix 161	161	M	60	69	Right-handed alpha
Helix 162	162	M	72	76	Right-handed 310
Helix 163	163	M	84	98	Right-handed alpha
Helix 164	164	O	173	178	Right-handed alpha
Helix 165	165	O	180	187	Right-handed alpha
Helix 166	166	O	219	224	Right-handed 310
Helix 167	167	O	243	268	Right-handed alpha
Helix 168	168	O	272	295	Right-handed alpha
Helix 169	169	O	296	302	Right-handed alpha
Helix 170	170	O	302	310	Right-handed alpha
Helix 171	171	O	325	332	Right-handed alpha
Helix 172	172	O	333	339	Right-handed 310
Helix 173	173	O	362	364	Right-handed 310
Helix 174	174	O	367	374	Right-handed alpha
Helix 175	175	O	377	386	Right-handed alpha
Helix 176	176	O	399	404	Right-handed alpha
Helix 177	177	O	416	428	Right-handed alpha
Helix 178	178	O	432	441	Right-handed alpha
Helix 179	179	O	447	456	Right-handed alpha
Helix 180	180	O	457	469	Right-handed alpha
Helix 181	181	O	470	474	Right-handed 310
Helix 182	182	O	475	483	Right-handed alpha
Helix 183	183	O	492	509	Right-handed alpha
Helix 184	184	O	521	529	Right-handed alpha
Helix 185	185	O	532	541	Right-handed alpha
Helix 186	186	O	565	567	Right-handed 310
Helix 187	187	O	572	576	Right-handed 310
Helix 188	188	N	60	69	Right-handed alpha
Helix 189	189	N	72	76	Right-handed 310
Helix 190	190	N	84	98	Right-handed alpha
Helix 191	191	P	173	178	Right-handed alpha
Helix 192	192	P	180	187	Right-handed alpha
Helix 193	193	P	219	225	Right-handed alpha
Helix 194	194	P	243	268	Right-handed alpha
Helix 195	195	P	272	295	Right-handed alpha
Helix 196	196	P	296	302	Right-handed alpha
Helix 197	197	P	302	310	Right-handed alpha
Helix 198	198	P	325	332	Right-handed alpha
Helix 199	199	P	333	339	Right-handed 310
Helix 200	200	P	362	364	Right-handed 310
Helix 201	201	P	367	374	Right-handed alpha
Helix 202	202	P	377	386	Right-handed alpha
Helix 203	203	P	399	404	Right-handed alpha
Helix 204	204	P	416	428	Right-handed alpha
Helix 205	205	P	432	440	Right-handed alpha
Helix 206	206	P	447	456	Right-handed alpha
Helix 207	207	P	457	469	Right-handed alpha
Helix 208	208	P	475	483	Right-handed alpha
Helix 209	209	P	492	509	Right-handed alpha
Helix 210	210	P	521	529	Right-handed alpha
Helix 211	211	P	532	541	Right-handed alpha
Helix 212	212	P	565	567	Right-handed 310
Helix 213	213	P	572	576	Right-handed 310

There are 39 sheets in PDB entry 4DL1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	28	first strand
Strand 2	C	164	165	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	83	first strand
Strand 2	C	388	390	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	129	first strand
Strand 2	C	143	144	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	204	205	first strand
Strand 2	C	208	209	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	342	344	first strand
Strand 2	C	358	360	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	545	547	first strand
Strand 2	C	561	563	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	28	first strand
Strand 2	D	164	165	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	83	first strand
Strand 2	D	388	390	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	204	205	first strand
Strand 2	D	208	209	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	342	344	first strand
Strand 2	D	358	360	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	545	547	first strand
Strand 2	D	561	563	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	27	28	first strand
Strand 2	G	164	165	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	78	83	first strand
Strand 2	G	388	390	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	204	205	first strand
Strand 2	G	208	209	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	342	344	first strand
Strand 2	G	358	360	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	545	547	first strand
Strand 2	G	561	563	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	27	28	first strand
Strand 2	H	164	165	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	78	83	first strand
Strand 2	H	388	390	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	128	129	first strand
Strand 2	H	143	144	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	342	344	first strand
Strand 2	H	358	360	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	545	547	first strand
Strand 2	H	561	563	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	27	28	first strand
Strand 2	K	164	165	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	78	83	first strand
Strand 2	K	388	390	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	342	344	first strand
Strand 2	K	358	360	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	545	547	first strand
Strand 2	K	561	563	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	27	28	first strand
Strand 2	L	164	165	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	78	83	first strand
Strand 2	L	388	390	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	204	205	first strand
Strand 2	L	208	209	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	342	344	first strand
Strand 2	L	358	360	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	545	547	first strand
Strand 2	L	561	563	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	27	28	first strand
Strand 2	O	164	165	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	78	83	first strand
Strand 2	O	388	390	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	342	344	first strand
Strand 2	O	358	360	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	545	547	first strand
Strand 2	O	561	563	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	27	28	first strand
Strand 2	P	164	165	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	78	83	first strand
Strand 2	P	388	390	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	128	129	first strand
Strand 2	P	143	144	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	342	344	first strand
Strand 2	P	358	360	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	545	547	first strand
Strand 2	P	561	563	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4DL1

Analysis of interatomic Contacts of Structural Units in PDB entry:
4DL1