Analysis of interatomic Contacts of Structural Units in PDB entry:
4DLE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DLE entry

There are 32 chains in PDB entry 4DLE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 294ALA 297
A
 TRP 299TRP 299
A
 GLU 303GLU 315
A
 MET 317ALA 335
A
 GLU 337GLU 337
A
 TYR 339LEU 367
A
 GLY 370ASP 372
A
 MET 374ASP 381
A
 SER 383THR 386
A
 GLU 388ARG 435
A
 LEU 437HIS 480
A
 PHE 482LEU 500
A
 ALA 502HIS 526
A
 ILE 528ASP 547
A
 LEU 549LEU 549
A
 ASP 551HIS 554
A
 ARG 556ASP 578
A
 ASN 580ILE 584
A
 VAL 586THR 588
A
 LEU 590VAL 649
A
 ARG 651ASP 655
A
 LEU 657ILE 684
A
 TYR 686PHE 700
A
 LYS 702VAL 730
A
 ASP 732MET 751
A
 VAL 753PHE 769
A
 ARG 771ALA 791
A
 LYS 793TYR 811
A
 LEU 813VAL 815
A
 LEU 817GLU 832
B
 G 101 C 111
C
 A 201 C 216
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 4DLE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
337 342Right-handed alpha
Helix 2
2
A
352 363Right-handed alpha
Helix 3
3
A
372 381Right-handed alpha
Helix 4
4
A
386 392Right-handed alpha
Helix 5
5
A
401 420Right-handed alpha
Helix 6
6
A
423 432Right-handed alpha
Helix 7
7
A
433 448Right-handed alpha
Helix 8
8
A
452 479Right-handed alpha
Helix 9
9
A
486 496Right-handed alpha
Helix 10
10
A
515 522Right-handed alpha
Helix 11
11
A
526 545Right-handed alpha
Helix 12
12
A
548 553Right-handed 310
Helix 13
13
A
588 596Right-handed alpha
Helix 14
14
A
613 624Right-handed alpha
Helix 15
15
A
625 634Right-handed alpha
Helix 16
16
A
637 647Right-handed alpha
Helix 17
17
A
655 661Right-handed alpha
Helix 18
18
A
662 671Right-handed alpha
Helix 19
19
A
674 682Right-handed alpha
Helix 20
20
A
685 700Right-handed alpha
Helix 21
21
A
702 718Right-handed alpha
Helix 22
22
A
737 774Right-handed alpha
Helix 23
23
A
795 809Right-handed alpha
Helix 24
24
A
828 832Right-handed 310
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There are 6 sheets in PDB entry 4DLE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 311first strand
Strand 2
A
321 327anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 348first strand
Strand 2
A
368 369parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
449 450first strand
Strand 2
A
559 560anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
563 565first strand
Strand 2
A
575 577anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
778 782first strand
Strand 2
A
786 792anti-parallel
Strand 3
A
604 611anti-parallel
Strand 4
A
819 824anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
719 721first strand
Strand 2
A
727 729anti-parallel
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