Analysis of interatomic Contacts of Structural Units in PDB entry:
4DLH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DLH entry

There are 2 chains in PDB entry 4DLH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 10VAL 186
B
 THR 11LEU 190
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 4DLH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 33Right-handed alpha
Helix 2
2
A
39 44Right-handed alpha
Helix 3
3
A
55 57Right-handed 310
Helix 4
4
A
120 124Right-handed alpha
Helix 5
5
A
152 154Right-handed 310
Helix 6
6
A
157 162Right-handed 310
Helix 7
7
A
171 173Right-handed 310
Helix 8
8
B
12 33Right-handed alpha
Helix 9
9
B
39 43Right-handed 310
Helix 10
10
B
55 57Right-handed 310
Helix 11
11
B
120 124Right-handed alpha
Helix 12
12
B
152 154Right-handed 310
Helix 13
13
B
157 161Right-handed 310
Helix 14
14
B
171 173Right-handed 310
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There are 6 sheets in PDB entry 4DLH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 106first strand
Strand 2
A
83 95anti-parallel
Strand 3
A
59 75anti-parallel
Strand 4
A
146 150anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 136first strand
Strand 2
A
113 119anti-parallel
Strand 3
A
175 176parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 51first strand
Strand 2
B
184 185anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 73first strand
Strand 2
B
85 95anti-parallel
Strand 3
B
98 107anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 73first strand
Strand 2
B
85 95anti-parallel
Strand 3
B
59 66anti-parallel
Strand 4
B
147 150anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 136first strand
Strand 2
B
113 119anti-parallel
Strand 3
B
175 176parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il