Analysis of interatomic Contacts of Structural Units in PDB entry:
4DLL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DLL entry

There are 2 chains in PDB entry 4DLL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 29ARG 316
B
 ARG 32GLY 318
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 4DLL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
42 53Right-handed alpha
Helix 2
2
A
63 72Right-handed alpha
Helix 3
3
A
80 86Right-handed alpha
Helix 4
4
A
97 106Right-handed alpha
Helix 5
5
A
109 114Right-handed alpha
Helix 6
6
A
127 141Right-handed alpha
Helix 7
7
A
152 160Right-handed alpha
Helix 8
8
A
169 183Right-handed alpha
Helix 9
9
A
193 223Right-handed alpha
Helix 10
10
A
226 235Right-handed alpha
Helix 11
11
A
241 246Right-handed alpha
Helix 12
12
A
246 253Right-handed alpha
Helix 13
13
A
261 279Right-handed alpha
Helix 14
14
A
283 298Right-handed alpha
Helix 15
15
A
305 307Right-handed 310
Helix 16
16
A
308 316Right-handed alpha
Helix 17
17
B
43 53Right-handed alpha
Helix 18
18
B
63 74Right-handed alpha
Helix 19
19
B
80 86Right-handed alpha
Helix 20
20
B
97 107Right-handed alpha
Helix 21
21
B
109 114Right-handed alpha
Helix 22
22
B
127 141Right-handed alpha
Helix 23
23
B
153 159Right-handed alpha
Helix 24
24
B
169 183Right-handed alpha
Helix 25
25
B
193 223Right-handed alpha
Helix 26
26
B
226 235Right-handed alpha
Helix 27
27
B
241 254Right-handed alpha
Helix 28
28
B
261 279Right-handed alpha
Helix 29
29
B
283 299Right-handed alpha
Helix 30
30
B
305 307Right-handed 310
Helix 31
31
B
308 316Right-handed alpha
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There are 4 sheets in PDB entry 4DLL. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 78first strand
Strand 2
A
56 60parallel
Strand 3
A
33 37parallel
Strand 4
A
90 93parallel
Strand 5
A
119 122parallel
Strand 6
A
144 147parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 151first strand
Strand 2
A
162 167anti-parallel
Strand 3
A
184 190parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 77first strand
Strand 2
B
56 60parallel
Strand 3
B
33 37parallel
Strand 4
B
90 93parallel
Strand 5
B
119 122parallel
Strand 6
B
144 147parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 151first strand
Strand 2
B
162 167anti-parallel
Strand 3
B
184 190parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il