Analysis of interatomic Contacts of Structural Units in PDB entry:
4DM8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DM8 entry

There are 4 chains in PDB entry 4DM8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 178GLU 417
B
 TYR 1180ASN 1418
C
 LYS 631GLN 638
D
 LYS 1631GLN 1638
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 4DM8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
183 199Right-handed alpha
Helix 2
2
A
223 247Right-handed alpha
Helix 3
3
A
250 254Right-handed 310
Helix 4
4
A
255 277Right-handed alpha
Helix 5
5
A
296 303Right-handed alpha
Helix 6
6
A
304 306Right-handed 310
Helix 7
7
A
307 319Right-handed alpha
Helix 8
8
A
320 322Right-handed 310
Helix 9
9
A
324 337Right-handed alpha
Helix 10
10
A
346 369Right-handed alpha
Helix 11
11
A
374 404Right-handed alpha
Helix 12
12
A
409 416Right-handed alpha
Helix 13
13
B
1181 1201Right-handed alpha
Helix 14
14
B
1223 1248Right-handed alpha
Helix 15
15
B
1250 1254Right-handed 310
Helix 16
16
B
1255 1277Right-handed alpha
Helix 17
17
B
1296 1303Right-handed alpha
Helix 18
18
B
1304 1306Right-handed 310
Helix 19
19
B
1307 1319Right-handed alpha
Helix 20
20
B
1320 1322Right-handed 310
Helix 21
21
B
1324 1337Right-handed alpha
Helix 22
22
B
1346 1367Right-handed alpha
Helix 23
23
B
1374 1381Right-handed alpha
Helix 24
24
B
1381 1402Right-handed alpha
Helix 25
25
B
1409 1416Right-handed alpha
Helix 26
26
C
632 638Right-handed alpha
Helix 27
27
D
1632 1638Right-handed alpha
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There are 2 sheets in PDB entry 4DM8. Click on sheet of interest to get list of strands forming it: A, B,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 280first strand
Strand 2
A
285 287anti-parallel
Strand 3
A
293 295anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1279 1280first strand
Strand 2
B
1285 1287anti-parallel
Strand 3
B
1293 1295anti-parallel
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