Analysis of interatomic Contacts of Structural Units in PDB entry:
4DMA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DMA entry

There are 4 chains in PDB entry 4DMA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 305LEU 549
B
 LYS 1303ARG 1548
E
 HIS 687GLY 697
F
 ARG 686GLY 697
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 4DMA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
306 310Right-handed 310
Helix 2
2
A
311 323Right-handed alpha
Helix 3
3
A
338 362Right-handed alpha
Helix 4
4
A
366 370Right-handed 310
Helix 5
5
A
371 395Right-handed alpha
Helix 6
6
A
412 418Right-handed 310
Helix 7
7
A
421 438Right-handed alpha
Helix 8
8
A
441 456Right-handed alpha
Helix 9
9
A
470 493Right-handed alpha
Helix 10
10
A
496 530Right-handed alpha
Helix 11
11
A
537 546Right-handed alpha
Helix 12
12
B
1311 1323Right-handed alpha
Helix 13
13
B
1338 1363Right-handed alpha
Helix 14
14
B
1371 1396Right-handed alpha
Helix 15
15
B
1413 1418Right-handed 310
Helix 16
16
B
1420 1438Right-handed alpha
Helix 17
17
B
1441 1456Right-handed alpha
Helix 18
18
B
1474 1493Right-handed alpha
Helix 19
19
B
1496 1532Right-handed alpha
Helix 20
20
B
1537 1546Right-handed alpha
Helix 21
21
E
688 696Right-handed alpha
Helix 22
22
F
688 696Right-handed alpha
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There are 2 sheets in PDB entry 4DMA. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 405first strand
Strand 2
A
408 410anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1401 1405first strand
Strand 2
B
1408 1411anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il