Analysis of interatomic Contacts of Structural Units in PDB entry:
4DMG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DMG entry

There are 2 chains in PDB entry 4DMG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 385
B
 MET 1LEU 385
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 4DMG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 20Right-handed alpha
Helix 2
2
A
26 28Right-handed 310
Helix 3
3
A
74 89Right-handed alpha
Helix 4
4
A
102 105Right-handed 310
Helix 5
5
A
124 130Right-handed alpha
Helix 6
6
A
130 143Right-handed alpha
Helix 7
7
A
152 159Right-handed alpha
Helix 8
8
A
198 200Right-handed 310
Helix 9
9
A
201 210Right-handed alpha
Helix 10
10
A
226 235Right-handed alpha
Helix 11
11
A
245 259Right-handed alpha
Helix 12
12
A
269 276Right-handed alpha
Helix 13
13
A
294 296Right-handed 310
Helix 14
14
A
297 315Right-handed alpha
Helix 15
15
A
332 348Right-handed alpha
Helix 16
16
A
369 373Right-handed 310
Helix 17
17
B
15 20Right-handed alpha
Helix 18
18
B
26 28Right-handed 310
Helix 19
19
B
74 89Right-handed alpha
Helix 20
20
B
102 105Right-handed 310
Helix 21
21
B
124 130Right-handed alpha
Helix 22
22
B
130 143Right-handed alpha
Helix 23
23
B
152 159Right-handed alpha
Helix 24
24
B
189 195Right-handed alpha
Helix 25
25
B
198 200Right-handed 310
Helix 26
26
B
201 212Right-handed alpha
Helix 27
27
B
226 235Right-handed alpha
Helix 28
28
B
245 259Right-handed alpha
Helix 29
29
B
269 276Right-handed alpha
Helix 30
30
B
294 296Right-handed 310
Helix 31
31
B
297 315Right-handed alpha
Helix 32
32
B
332 348Right-handed alpha
Helix 33
33
B
369 373Right-handed 310
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There are 8 sheets in PDB entry 4DMG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 25first strand
Strand 2
A
63 67anti-parallel
Strand 3
A
49 55anti-parallel
Strand 4
A
38 43anti-parallel
Strand 5
A
7 10parallel
Strand 6
A
30 32anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 100first strand
Strand 2
A
109 114anti-parallel
Strand 3
A
117 122anti-parallel
Strand 4
A
146 149parallel
Strand 5
A
166 170anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 180first strand
Strand 2
A
183 188anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 267first strand
Strand 2
A
238 243parallel
Strand 3
A
217 221parallel
Strand 4
A
281 286parallel
Strand 5
A
316 326parallel
Strand 6
A
376 382anti-parallel
Strand 7
A
351 358anti-parallel
Strand 8
B
365 366anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 366first strand
Strand 2
B
351 358anti-parallel
Strand 3
B
376 382anti-parallel
Strand 4
B
316 326anti-parallel
Strand 5
B
281 286parallel
Strand 6
B
217 221parallel
Strand 7
B
238 243parallel
Strand 8
B
263 267parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 25first strand
Strand 2
B
63 67anti-parallel
Strand 3
B
49 55anti-parallel
Strand 4
B
38 43anti-parallel
Strand 5
B
7 10parallel
Strand 6
B
30 32anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 100first strand
Strand 2
B
109 114anti-parallel
Strand 3
B
117 122anti-parallel
Strand 4
B
146 149parallel
Strand 5
B
166 170anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 180first strand
Strand 2
B
183 188anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il