Analysis of interatomic Contacts of Structural Units in PDB entry:
4DMI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DMI entry

There are 5 chains in PDB entry 4DMI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 3PRO 176
B
 ALA 1PRO 176
C
 GLN 3PRO 176
D
 GLN 4PRO 176
E
 ALA 1PRO 176
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 4DMI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 20Right-handed alpha
Helix 2
2
A
44 49Right-handed alpha
Helix 3
3
A
54 59Right-handed alpha
Helix 4
4
B
9 20Right-handed alpha
Helix 5
5
B
44 50Right-handed alpha
Helix 6
6
B
54 59Right-handed alpha
Helix 7
7
C
9 20Right-handed alpha
Helix 8
8
C
44 49Right-handed alpha
Helix 9
9
C
54 59Right-handed alpha
Helix 10
10
D
9 20Right-handed alpha
Helix 11
11
D
44 49Right-handed alpha
Helix 12
12
D
54 59Right-handed alpha
Helix 13
13
E
9 20Right-handed alpha
Helix 14
14
E
44 49Right-handed alpha
Helix 15
15
E
54 59Right-handed alpha
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There are no sheets in PDB entry 4DMI
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il