Analysis of interatomic Contacts of Structural Units in PDB entry:
4DML


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DML entry

There are 4 chains in PDB entry 4DML (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 4ALA 249
B
 LEU 4ALA 249
C
 LEU 4ALA 249
D
 LEU 4MET 248
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 4DML. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 31Right-handed alpha
Helix 2
2
A
42 56Right-handed alpha
Helix 3
3
A
69 85Right-handed alpha
Helix 4
4
A
106 118Right-handed alpha
Helix 5
5
A
118 136Right-handed alpha
Helix 6
6
A
146 151Right-handed alpha
Helix 7
7
A
155 177Right-handed alpha
Helix 8
8
A
178 180Right-handed 310
Helix 9
9
A
201 208Right-handed 310
Helix 10
10
A
215 229Right-handed alpha
Helix 11
11
A
230 235Right-handed 310
Helix 12
12
B
18 31Right-handed alpha
Helix 13
13
B
42 56Right-handed alpha
Helix 14
14
B
69 85Right-handed alpha
Helix 15
15
B
101 105Right-handed 310
Helix 16
16
B
106 118Right-handed alpha
Helix 17
17
B
118 136Right-handed alpha
Helix 18
18
B
145 151Right-handed alpha
Helix 19
19
B
155 177Right-handed alpha
Helix 20
20
B
178 180Right-handed 310
Helix 21
21
B
203 207Right-handed 310
Helix 22
22
B
215 229Right-handed alpha
Helix 23
23
B
230 235Right-handed 310
Helix 24
24
C
18 31Right-handed alpha
Helix 25
25
C
42 57Right-handed alpha
Helix 26
26
C
69 85Right-handed alpha
Helix 27
27
C
106 118Right-handed alpha
Helix 28
28
C
118 135Right-handed alpha
Helix 29
29
C
145 151Right-handed alpha
Helix 30
30
C
155 177Right-handed alpha
Helix 31
31
C
178 180Right-handed 310
Helix 32
32
C
215 229Right-handed alpha
Helix 33
33
C
230 235Right-handed 310
Helix 34
34
D
18 31Right-handed alpha
Helix 35
35
D
43 56Right-handed alpha
Helix 36
36
D
69 85Right-handed alpha
Helix 37
37
D
101 105Right-handed 310
Helix 38
38
D
106 118Right-handed alpha
Helix 39
39
D
118 136Right-handed alpha
Helix 40
40
D
146 151Right-handed alpha
Helix 41
41
D
155 177Right-handed alpha
Helix 42
42
D
178 180Right-handed 310
Helix 43
43
D
215 229Right-handed alpha
Helix 44
44
D
230 235Right-handed 310
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There are 4 sheets in PDB entry 4DML. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 64first strand
Strand 2
A
34 39parallel
Strand 3
A
10 13parallel
Strand 4
A
89 92parallel
Strand 5
A
139 143parallel
Strand 6
A
182 188parallel
Strand 7
A
239 242parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 64first strand
Strand 2
B
34 39parallel
Strand 3
B
10 13parallel
Strand 4
B
89 92parallel
Strand 5
B
139 143parallel
Strand 6
B
182 188parallel
Strand 7
B
239 242parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 64first strand
Strand 2
C
34 39parallel
Strand 3
C
10 13parallel
Strand 4
C
89 92parallel
Strand 5
C
139 143parallel
Strand 6
C
182 188parallel
Strand 7
C
239 242parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
60 64first strand
Strand 2
D
34 39parallel
Strand 3
D
10 13parallel
Strand 4
D
89 92parallel
Strand 5
D
139 143parallel
Strand 6
D
182 188parallel
Strand 7
D
239 242parallel
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