Analysis of interatomic Contacts of Structural Units in PDB entry:
4DMO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DMO entry

There are 2 chains in PDB entry 4DMO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 263
B
 MET 1LEU 263
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 4DMO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 13Right-handed alpha
Helix 2
2
A
21 23Right-handed 310
Helix 3
3
A
24 36Right-handed alpha
Helix 4
4
A
40 45Right-handed alpha
Helix 5
5
A
52 61Right-handed alpha
Helix 6
6
A
68 83Right-handed alpha
Helix 7
7
A
192 206Right-handed alpha
Helix 8
8
A
247 260Right-handed alpha
Helix 9
9
B
2 13Right-handed alpha
Helix 10
10
B
21 36Right-handed alpha
Helix 11
11
B
40 45Right-handed alpha
Helix 12
12
B
52 61Right-handed alpha
Helix 13
13
B
68 83Right-handed alpha
Helix 14
14
B
192 206Right-handed alpha
Helix 15
15
B
247 260Right-handed alpha
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There are 6 sheets in PDB entry 4DMO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 39first strand
Strand 2
A
216 221anti-parallel
Strand 3
A
224 229anti-parallel
Strand 4
A
232 237anti-parallel
Strand 5
A
240 245anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 102first strand
Strand 2
A
86 96anti-parallel
Strand 3
A
108 115anti-parallel
Strand 4
A
118 122anti-parallel
Strand 5
A
135 136anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 102first strand
Strand 2
A
86 96anti-parallel
Strand 3
A
181 186anti-parallel
Strand 4
A
159 166anti-parallel
Strand 5
A
147 156anti-parallel
Strand 6
A
142 144anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 39first strand
Strand 2
B
216 221anti-parallel
Strand 3
B
224 229anti-parallel
Strand 4
B
232 237anti-parallel
Strand 5
B
240 245anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 102first strand
Strand 2
B
86 96anti-parallel
Strand 3
B
108 115anti-parallel
Strand 4
B
118 122anti-parallel
Strand 5
B
135 136anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 102first strand
Strand 2
B
86 96anti-parallel
Strand 3
B
181 191anti-parallel
Strand 4
B
159 166anti-parallel
Strand 5
B
147 156anti-parallel
Strand 6
B
142 144anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il