Analysis of interatomic Contacts of Structural Units in PDB entry:
4DMU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DMU entry

There are117 chains in PDB entry 4DMU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 4PRO 5
A
 GLY 7PRO 8
A
 GLY 10GLN 14
A
 GLY 16PHE 20
A
 GLY 22PRO 23
A
 GLY 25PRO 26
A
 GLY 101PRO 102
A
 GLY 104PRO 105
A
 GLY 107PRO 108
A
 GLY 110GLN 114
A
 GLY 116PHE 120
A
 GLY 122PRO 123
A
 GLY 125PRO 126
A
 GLY 201PRO 202
A
 GLY 204PRO 205
A
 GLY 207PRO 208
A
 GLY 210GLN 214
A
 GLY 216PHE 220
A
 GLY 222PRO 223
A
 GLY 225PRO 226
B
 CYS 1686SER 1873
C
 GLY 4PRO 5
C
 GLY 7PRO 8
C
 GLY 10GLN 14
C
 GLY 16PHE 20
C
 GLY 22PRO 23
C
 GLY 25PRO 26
C
 GLY 101PRO 102
C
 GLY 104PRO 105
C
 GLY 107PRO 108
C
 GLY 110GLN 114
C
 GLY 116PHE 120
C
 GLY 122PRO 123
C
 GLY 125PRO 126
C
 GLY 201PRO 202
C
 GLY 204PRO 205
C
 GLY 207PRO 208
C
 GLY 210GLN 214
C
 GLY 216PHE 220
C
 GLY 222PRO 223
C
 GLY 225PRO 226
D
 CYS 1686SER 1873
E
 GLY 4PRO 5
E
 GLY 7PRO 8
E
 GLY 10GLN 14
E
 GLY 16PHE 20
E
 GLY 22PRO 23
E
 GLY 25PRO 26
E
 GLY 101PRO 102
E
 GLY 104PRO 105
E
 GLY 107PRO 108
E
 GLY 110GLN 114
E
 GLY 116PHE 120
E
 GLY 122PRO 123
E
 GLY 125PRO 126
E
 GLY 201PRO 202
E
 GLY 204PRO 205
E
 GLY 207PRO 208
E
 GLY 210GLN 214
E
 GLY 216PHE 220
E
 GLY 222PRO 223
E
 GLY 225PRO 226
F
 CYS 1686SER 1873
G
 GLY 4PRO 5
G
 GLY 7PRO 8
G
 GLY 10GLN 14
G
 GLY 16PHE 20
G
 GLY 22PRO 23
G
 GLY 25PRO 26
G
 GLY 101PRO 102
G
 GLY 104PRO 105
G
 GLY 107PRO 108
G
 GLY 110GLN 114
G
 GLY 116PHE 120
G
 GLY 122PRO 123
G
 GLY 125PRO 126
G
 GLY 201PRO 202
G
 GLY 204PRO 205
G
 GLY 207PRO 208
G
 GLY 210GLN 214
G
 GLY 216PHE 220
G
 GLY 222PRO 223
G
 GLY 225PRO 226
H
 SER 1687SER 1873
I
 GLY 4PRO 5
I
 GLY 7PRO 8
I
 GLY 10GLN 14
I
 GLY 16PHE 20
I
 GLY 22PRO 23
I
 GLY 25PRO 26
I
 GLY 101PRO 102
I
 GLY 104PRO 105
I
 GLY 107PRO 108
I
 GLY 110GLN 114
I
 GLY 116PHE 120
I
 GLY 122PRO 123
I
 GLY 125PRO 126
I
 GLY 201PRO 202
I
 GLY 204PRO 205
I
 GLY 207PRO 208
I
 GLY 210GLN 214
I
 GLY 216PHE 220
I
 GLY 222PRO 223
I
 GLY 225PRO 226
J
 ALA 1683SER 1873
K
 PRO 2PRO 2
K
 GLY 4PRO 5
K
 GLY 7PRO 8
K
 GLY 10GLN 14
K
 GLY 16PHE 20
K
 GLY 22PRO 23
K
 GLY 25PRO 26
K
 GLY 101PRO 102
K
 GLY 104PRO 105
K
 GLY 107PRO 108
K
 GLY 110GLN 114
K
 GLY 116PHE 120
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 4DMU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
1703 1721Right-handed alpha
Helix 2
2
B
1750 1760Right-handed alpha
Helix 3
3
B
1769 1783Right-handed alpha
Helix 4
4
B
1784 1787Right-handed 310
Helix 5
5
B
1808 1818Right-handed alpha
Helix 6
6
B
1832 1840Right-handed alpha
Helix 7
7
B
1843 1848Right-handed 310
Helix 8
8
B
1853 1861Right-handed 310
Helix 9
9
B
1865 1871Right-handed alpha
Helix 10
10
D
1704 1721Right-handed alpha
Helix 11
11
D
1750 1760Right-handed alpha
Helix 12
12
D
1769 1783Right-handed alpha
Helix 13
13
D
1784 1787Right-handed 310
Helix 14
14
D
1808 1818Right-handed alpha
Helix 15
15
D
1832 1840Right-handed alpha
Helix 16
16
D
1843 1847Right-handed 310
Helix 17
17
D
1853 1856Right-handed 310
Helix 18
18
D
1857 1862Right-handed alpha
Helix 19
19
D
1865 1871Right-handed alpha
Helix 20
20
F
1703 1721Right-handed alpha
Helix 21
21
F
1750 1760Right-handed alpha
Helix 22
22
F
1769 1782Right-handed alpha
Helix 23
23
F
1783 1787Right-handed 310
Helix 24
24
F
1808 1818Right-handed alpha
Helix 25
25
F
1832 1841Right-handed alpha
Helix 26
26
F
1842 1848Right-handed 310
Helix 27
27
F
1853 1861Right-handed 310
Helix 28
28
F
1866 1871Right-handed alpha
Helix 29
29
H
1703 1721Right-handed alpha
Helix 30
30
H
1750 1760Right-handed alpha
Helix 31
31
H
1769 1782Right-handed alpha
Helix 32
32
H
1783 1787Right-handed 310
Helix 33
33
H
1808 1818Right-handed alpha
Helix 34
34
H
1832 1841Right-handed alpha
Helix 35
35
H
1843 1848Right-handed 310
Helix 36
36
H
1853 1855Right-handed 310
Helix 37
37
H
1856 1862Right-handed alpha
Helix 38
38
H
1866 1871Right-handed alpha
Helix 39
39
J
1703 1721Right-handed alpha
Helix 40
40
J
1750 1760Right-handed alpha
Helix 41
41
J
1769 1782Right-handed alpha
Helix 42
42
J
1783 1787Right-handed 310
Helix 43
43
J
1808 1818Right-handed alpha
Helix 44
44
J
1832 1841Right-handed alpha
Helix 45
45
J
1843 1848Right-handed 310
Helix 46
46
J
1853 1856Right-handed 310
Helix 47
47
J
1857 1862Right-handed alpha
Helix 48
48
L
1704 1721Right-handed alpha
Helix 49
49
L
1750 1760Right-handed alpha
Helix 50
50
L
1769 1782Right-handed alpha
Helix 51
51
L
1783 1787Right-handed 310
Helix 52
52
L
1808 1818Right-handed alpha
Helix 53
53
L
1832 1840Right-handed alpha
Helix 54
54
L
1841 1848Right-handed 310
Helix 55
55
L
1853 1856Right-handed 310
Helix 56
56
L
1857 1862Right-handed alpha
Helix 57
57
L
1865 1871Right-handed alpha
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There are 6 sheets in PDB entry 4DMU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1740 1743first strand
Strand 2
B
1728 1735anti-parallel
Strand 3
B
1690 1697parallel
Strand 4
B
1793 1800parallel
Strand 5
B
1820 1827parallel
Strand 6
B
1849 1851parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1739 1743first strand
Strand 2
D
1728 1735anti-parallel
Strand 3
D
1690 1697parallel
Strand 4
D
1793 1800parallel
Strand 5
D
1820 1827parallel
Strand 6
D
1849 1851parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
1739 1743first strand
Strand 2
F
1728 1735anti-parallel
Strand 3
F
1690 1697parallel
Strand 4
F
1793 1800parallel
Strand 5
F
1820 1827parallel
Strand 6
F
1849 1851parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
1739 1743first strand
Strand 2
H
1728 1735anti-parallel
Strand 3
H
1690 1697parallel
Strand 4
H
1793 1800parallel
Strand 5
H
1820 1827parallel
Strand 6
H
1849 1851parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
1740 1743first strand
Strand 2
J
1728 1735anti-parallel
Strand 3
J
1690 1697parallel
Strand 4
J
1793 1800parallel
Strand 5
J
1820 1827parallel
Strand 6
J
1849 1851parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
1739 1743first strand
Strand 2
L
1728 1735anti-parallel
Strand 3
L
1690 1697parallel
Strand 4
L
1793 1800parallel
Strand 5
L
1820 1827parallel
Strand 6
L
1849 1851parallel
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