Analysis of interatomic Contacts of Structural Units in PDB entry:
4DMZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DMZ entry

There are 2 chains in PDB entry 4DMZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 156VAL 455
B
 ASN 156VAL 455
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 4DMZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
158 173Right-handed alpha
Helix 2
2
A
179 196Right-handed alpha
Helix 3
3
A
230 240Right-handed alpha
Helix 4
4
A
284 288Right-handed 310
Helix 5
5
A
289 308Right-handed alpha
Helix 6
6
A
319 339Right-handed alpha
Helix 7
7
A
354 364Right-handed alpha
Helix 8
8
A
393 395Right-handed 310
Helix 9
9
A
396 412Right-handed alpha
Helix 10
10
A
416 420Right-handed 310
Helix 11
11
A
436 444Right-handed alpha
Helix 12
12
B
158 174Right-handed alpha
Helix 13
13
B
179 197Right-handed alpha
Helix 14
14
B
230 240Right-handed alpha
Helix 15
15
B
289 308Right-handed alpha
Helix 16
16
B
320 336Right-handed alpha
Helix 17
17
B
354 365Right-handed alpha
Helix 18
18
B
392 412Right-handed alpha
Helix 19
19
B
416 420Right-handed 310
Helix 20
20
B
434 444Right-handed alpha
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There are 4 sheets in PDB entry 4DMZ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 220first strand
Strand 2
A
200 205anti-parallel
Strand 3
A
274 282anti-parallel
Strand 4
A
263 268anti-parallel
Strand 5
A
243 244anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
371 376first strand
Strand 2
A
382 388anti-parallel
Strand 3
A
342 349anti-parallel
Strand 4
A
422 429anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
218 220first strand
Strand 2
B
200 205anti-parallel
Strand 3
B
274 282anti-parallel
Strand 4
B
263 268anti-parallel
Strand 5
B
243 244anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
371 376first strand
Strand 2
B
382 388anti-parallel
Strand 3
B
342 349anti-parallel
Strand 4
B
422 429anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il