Analysis of interatomic Contacts of Structural Units in PDB entry:
4DN5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DN5 entry

There are 2 chains in PDB entry 4DN5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 332PRO 675
B
 VAL 333PRO 675
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 4DN5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
333 342Right-handed alpha
Helix 2
2
A
349 364Right-handed alpha
Helix 3
3
A
438 443Right-handed alpha
Helix 4
4
A
476 485Right-handed alpha
Helix 5
5
A
488 509Right-handed alpha
Helix 6
6
A
517 519Right-handed 310
Helix 7
7
A
559 563Right-handed 310
Helix 8
8
A
564 569Right-handed alpha
Helix 9
9
A
575 592Right-handed alpha
Helix 10
10
A
604 611Right-handed alpha
Helix 11
11
A
613 618Right-handed 310
Helix 12
12
A
623 634Right-handed alpha
Helix 13
13
A
643 659Right-handed alpha
Helix 14
14
B
334 342Right-handed alpha
Helix 15
15
B
349 364Right-handed alpha
Helix 16
16
B
438 443Right-handed alpha
Helix 17
17
B
476 484Right-handed alpha
Helix 18
18
B
488 508Right-handed alpha
Helix 19
19
B
517 519Right-handed 310
Helix 20
20
B
559 563Right-handed 310
Helix 21
21
B
564 570Right-handed alpha
Helix 22
22
B
575 592Right-handed alpha
Helix 23
23
B
604 611Right-handed alpha
Helix 24
24
B
613 618Right-handed 310
Helix 25
25
B
625 634Right-handed alpha
Helix 26
26
B
643 658Right-handed alpha
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There are 7 sheets in PDB entry 4DN5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 347first strand
Strand 2
A
377 381parallel
Strand 3
A
455 461anti-parallel
Strand 4
A
464 469anti-parallel
Strand 5
A
425 432anti-parallel
Strand 6
A
413 419anti-parallel
Strand 7
A
399 401anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 347first strand
Strand 2
A
377 381parallel
Strand 3
A
455 461anti-parallel
Strand 4
A
464 469anti-parallel
Strand 5
A
425 432anti-parallel
Strand 6
A
413 419anti-parallel
Strand 7
A
407 408anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
511 512first strand
Strand 2
A
539 540anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
521 523first strand
Strand 2
A
530 532anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
345 347first strand
Strand 2
B
377 381parallel
Strand 3
B
455 461anti-parallel
Strand 4
B
464 469anti-parallel
Strand 5
B
425 432anti-parallel
Strand 6
B
413 419anti-parallel
Strand 7
B
399 408anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
511 512first strand
Strand 2
B
539 540anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
521 523first strand
Strand 2
B
530 532anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il