Analysis of interatomic Contacts of Structural Units in PDB entry:
4DN7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DN7 entry

There are 2 chains in PDB entry 4DN7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 2MSE 407
B
 GLN 2MSE 407
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 4DN7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 15Right-handed alpha
Helix 2
2
A
27 31Right-handed 310
Helix 3
3
A
43 47Right-handed 310
Helix 4
4
A
48 58Right-handed alpha
Helix 5
5
A
93 100Right-handed alpha
Helix 6
6
A
101 106Right-handed 310
Helix 7
7
A
116 125Right-handed alpha
Helix 8
8
A
355 365Right-handed alpha
Helix 9
9
A
368 383Right-handed alpha
Helix 10
10
A
384 386Right-handed 310
Helix 11
11
A
389 391Right-handed 310
Helix 12
12
A
392 406Right-handed alpha
Helix 13
13
B
3 15Right-handed alpha
Helix 14
14
B
27 31Right-handed 310
Helix 15
15
B
43 47Right-handed 310
Helix 16
16
B
48 58Right-handed alpha
Helix 17
17
B
93 100Right-handed alpha
Helix 18
18
B
101 106Right-handed 310
Helix 19
19
B
116 125Right-handed alpha
Helix 20
20
B
355 365Right-handed alpha
Helix 21
21
B
368 383Right-handed alpha
Helix 22
22
B
384 386Right-handed 310
Helix 23
23
B
389 391Right-handed 310
Helix 24
24
B
392 406Right-handed alpha
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There are no sheets in PDB entry 4DN7
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il