Analysis of interatomic Contacts of Structural Units in PDB entry:
4DN9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DN9 entry

There are 2 chains in PDB entry 4DN9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0GLY 97
B
 SER 0ILE 96
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 4DN9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 26Right-handed alpha
Helix 2
2
A
55 62Right-handed alpha
Helix 3
3
A
65 76Right-handed alpha
Helix 4
4
B
14 26Right-handed alpha
Helix 5
5
B
55 64Right-handed alpha
Helix 6
6
B
65 76Right-handed alpha
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There is 1 sheet ( A) in PDB entry 4DN9.

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 10first strand
Strand 2
A
43 53anti-parallel
Strand 3
A
32 40anti-parallel
Strand 4
B
79 94anti-parallel
Strand 5
B
2 10anti-parallel
Strand 6
B
43 53anti-parallel
Strand 7
B
32 40anti-parallel
Strand 8
A
79 94anti-parallel
Strand 9
A
2 10anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il