Analysis of interatomic Contacts of Structural Units in PDB entry:
4DNG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DNG entry

There are 2 chains in PDB entry 4DNG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 478
B
 MET 1LYS 478
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 4DNG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 6Right-handed 310
Helix 2
2
A
42 61Right-handed alpha
Helix 3
3
A
64 82Right-handed alpha
Helix 4
4
A
82 95Right-handed alpha
Helix 5
5
A
97 119Right-handed alpha
Helix 6
6
A
120 122Right-handed 310
Helix 7
7
A
155 170Right-handed alpha
Helix 8
8
A
179 181Right-handed 310
Helix 9
9
A
182 187Right-handed alpha
Helix 10
10
A
187 197Right-handed alpha
Helix 11
11
A
210 215Right-handed alpha
Helix 12
12
A
216 221Right-handed alpha
Helix 13
13
A
232 247Right-handed alpha
Helix 14
14
A
267 280Right-handed alpha
Helix 15
15
A
297 314Right-handed alpha
Helix 16
16
A
331 348Right-handed alpha
Helix 17
17
A
375 380Right-handed alpha
Helix 18
18
A
394 404Right-handed alpha
Helix 19
19
A
417 426Right-handed alpha
Helix 20
20
A
462 468Right-handed alpha
Helix 21
21
B
2 6Right-handed 310
Helix 22
22
B
42 61Right-handed alpha
Helix 23
23
B
64 82Right-handed alpha
Helix 24
24
B
82 95Right-handed alpha
Helix 25
25
B
97 117Right-handed alpha
Helix 26
26
B
155 170Right-handed alpha
Helix 27
27
B
179 181Right-handed 310
Helix 28
28
B
182 187Right-handed alpha
Helix 29
29
B
187 197Right-handed alpha
Helix 30
30
B
210 215Right-handed alpha
Helix 31
31
B
216 221Right-handed alpha
Helix 32
32
B
232 246Right-handed alpha
Helix 33
33
B
267 280Right-handed alpha
Helix 34
34
B
299 313Right-handed alpha
Helix 35
35
B
331 348Right-handed alpha
Helix 36
36
B
394 404Right-handed alpha
Helix 37
37
B
417 428Right-handed alpha
Helix 38
38
B
462 468Right-handed alpha
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There are 10 sheets in PDB entry 4DNG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 11first strand
Strand 2
A
14 16anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 27first strand
Strand 2
A
34 39anti-parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 126first strand
Strand 2
A
135 143anti-parallel
Strand 3
A
469 477anti-parallel
Strand 4
B
432 435parallel
Strand 5
B
412 414parallel
Strand 6
B
258 262parallel
Strand 7
B
290 296parallel
Strand 8
B
386 392parallel
Strand 9
B
366 369parallel
Strand 10
B
351 354anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 206first strand
Strand 2
A
173 177parallel
Strand 3
A
146 150parallel
Strand 4
A
226 231parallel
Strand 5
A
249 254parallel
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There are 10 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 354first strand
Strand 2
A
366 369anti-parallel
Strand 3
A
386 392parallel
Strand 4
A
290 296parallel
Strand 5
A
258 262parallel
Strand 6
A
410 414parallel
Strand 7
A
432 435parallel
Strand 8
B
469 476parallel
Strand 9
B
136 143anti-parallel
Strand 10
B
124 126anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
358 359first strand
Strand 2
A
362 363anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 10first strand
Strand 2
B
15 16anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 27first strand
Strand 2
B
34 39anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 206first strand
Strand 2
B
173 177parallel
Strand 3
B
146 150parallel
Strand 4
B
226 231parallel
Strand 5
B
249 254parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
358 359first strand
Strand 2
B
362 363anti-parallel
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