Analysis of interatomic Contacts of Structural Units in PDB entry:
4DNH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DNH entry

There is 1 chain in PDB entry 4DNH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3VAL 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 4DNH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 34Right-handed 310
Helix 2
2
A
61 75Right-handed alpha
Helix 3
3
A
83 87Right-handed 310
Helix 4
4
A
93 110Right-handed alpha
Helix 5
5
A
132 150Right-handed alpha
Helix 6
6
A
159 166Right-handed alpha
Helix 7
7
A
168 183Right-handed alpha
Helix 8
8
A
197 201Right-handed 310
Helix 9
9
A
208 223Right-handed alpha
Helix 10
10
A
236 245Right-handed alpha
Helix 11
11
A
260 267Right-handed alpha
Helix 12
12
A
278 283Right-handed alpha
Helix 13
13
A
283 296Right-handed alpha
Helix 14
14
A
298 307Right-handed alpha
Helix 15
15
A
308 317Right-handed alpha
Helix 16
16
A
320 322Right-handed 310
Helix 17
17
A
323 335Right-handed alpha
Helix 18
18
A
343 350Right-handed 310
Helix 19
19
A
352 366Right-handed alpha
Helix 20
20
A
371 386Right-handed alpha
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There are 2 sheets in PDB entry 4DNH. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 10first strand
Strand 2
A
13 18anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 41first strand
Strand 2
A
78 81parallel
Strand 3
A
116 120parallel
Strand 4
A
154 156parallel
Strand 5
A
187 192parallel
Strand 6
A
227 233parallel
Strand 7
A
252 255parallel
Strand 8
A
274 277parallel
Strand 9
A
38 41parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il