Analysis of interatomic Contacts of Structural Units in PDB entry:
4DNI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DNI entry

There is 1 chain in PDB entry 4DNI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 15ASP 271
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 4DNI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 38Right-handed alpha
Helix 2
2
A
94 105Right-handed alpha
Helix 3
3
A
149 151Right-handed 310
Helix 4
4
A
214 225Right-handed alpha
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There are 2 sheets in PDB entry 4DNI. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 147first strand
Strand 2
A
110 123anti-parallel
Strand 3
A
45 61anti-parallel
Strand 4
A
160 177anti-parallel
Strand 5
A
230 243anti-parallel
Strand 6
A
264 267anti-parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 123first strand
Strand 2
A
130 138anti-parallel
Strand 3
A
85 92parallel
Strand 4
A
64 74anti-parallel
Strand 5
A
45 61anti-parallel
Strand 6
A
160 177anti-parallel
Strand 7
A
180 193anti-parallel
Strand 8
A
202 213anti-parallel
Strand 9
A
250 258parallel
Strand 10
A
230 243anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il