Analysis of interatomic Contacts of Structural Units in PDB entry:
4DNJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DNJ entry

There is 1 chain in PDB entry 4DNJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 14ALA 412
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 4DNJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 35Right-handed alpha
Helix 2
2
A
36 47Right-handed alpha
Helix 3
3
A
62 71Right-handed alpha
Helix 4
4
A
105 118Right-handed alpha
Helix 5
5
A
119 144Right-handed alpha
Helix 6
6
A
156 168Right-handed alpha
Helix 7
7
A
173 175Right-handed 310
Helix 8
8
A
176 188Right-handed alpha
Helix 9
9
A
192 201Right-handed alpha
Helix 10
10
A
202 213Right-handed alpha
Helix 11
11
A
214 218Right-handed 310
Helix 12
12
A
222 230Right-handed alpha
Helix 13
13
A
239 252Right-handed alpha
Helix 14
14
A
253 270Right-handed alpha
Helix 15
15
A
270 280Right-handed alpha
Helix 16
16
A
283 296Right-handed alpha
Helix 17
17
A
326 330Right-handed alpha
Helix 18
18
A
363 381Right-handed alpha
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There are 4 sheets in PDB entry 4DNJ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 23first strand
Strand 2
A
50 52parallel
Strand 3
A
57 60anti-parallel
Strand 4
A
321 325parallel
Strand 5
A
300 305anti-parallel
Strand 6
A
76 77anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 149first strand
Strand 2
A
406 411anti-parallel
Strand 3
A
382 387anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 311first strand
Strand 2
A
314 316anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 395first strand
Strand 2
A
400 404anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il