Analysis of interatomic Contacts of Structural Units in PDB entry:
4DNM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DNM entry

There is 1 chain in PDB entry 4DNM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3PRO 289
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 4DNM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 20Right-handed 310
Helix 2
2
A
27 31Right-handed 310
Helix 3
3
A
35 46Right-handed alpha
Helix 4
4
A
59 72Right-handed alpha
Helix 5
5
A
89 96Right-handed alpha
Helix 6
6
A
108 112Right-handed 310
Helix 7
7
A
114 120Right-handed alpha
Helix 8
8
A
121 134Right-handed alpha
Helix 9
9
A
143 145Right-handed 310
Helix 10
10
A
146 157Right-handed alpha
Helix 11
11
A
166 169Right-handed 310
Helix 12
12
A
171 175Right-handed 310
Helix 13
13
A
180 194Right-handed alpha
Helix 14
14
A
205 209Right-handed 310
Helix 15
15
A
216 235Right-handed alpha
Helix 16
16
A
246 251Right-handed 310
Helix 17
17
A
253 269Right-handed alpha
Helix 18
18
A
270 278Right-handed alpha
Helix 19
19
A
279 286Right-handed alpha
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There is 1 sheet ( A) in PDB entry 4DNM.

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 10first strand
Strand 2
A
50 54parallel
Strand 3
A
76 81parallel
Strand 4
A
102 107parallel
Strand 5
A
137 140parallel
Strand 6
A
162 164parallel
Strand 7
A
198 202parallel
Strand 8
A
239 241parallel
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