Analysis of interatomic Contacts of Structural Units in PDB entry:
4DNR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DNR entry

There are 3 chains in PDB entry 4DNR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ALA 79SER 400
C
 ALA 79SER 402
A
 MET 1HIS 1043
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 4DNR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
158 171Right-handed alpha
Helix 2
2
B
174 188Right-handed alpha
Helix 3
3
B
191 202Right-handed alpha
Helix 4
4
B
254 259Right-handed alpha
Helix 5
5
B
390 397Right-handed alpha
Helix 6
6
C
85 93Right-handed alpha
Helix 7
7
C
158 171Right-handed alpha
Helix 8
8
C
175 187Right-handed alpha
Helix 9
9
C
191 200Right-handed alpha
Helix 10
10
C
253 258Right-handed 310
Helix 11
11
C
330 332Right-handed 310
Helix 12
12
C
381 392Right-handed alpha
Helix 13
13
C
393 401Right-handed alpha
Helix 14
14
A
3 11Right-handed alpha
Helix 15
15
A
12 34Right-handed alpha
Helix 16
16
A
57 65Right-handed alpha
Helix 17
17
A
65 74Right-handed alpha
Helix 18
18
A
102 111Right-handed alpha
Helix 19
19
A
111 116Right-handed alpha
Helix 20
20
A
152 163Right-handed alpha
Helix 21
21
A
163 169Right-handed alpha
Helix 22
22
A
192 200Right-handed alpha
Helix 23
23
A
202 211Right-handed alpha
Helix 24
24
A
239 245Right-handed alpha
Helix 25
25
A
296 312Right-handed alpha
Helix 26
26
A
327 353Right-handed alpha
Helix 27
27
A
360 368Right-handed alpha
Helix 28
28
A
368 385Right-handed alpha
Helix 29
29
A
398 419Right-handed alpha
Helix 30
30
A
433 445Right-handed alpha
Helix 31
31
A
446 454Right-handed alpha
Helix 32
32
A
455 467Right-handed alpha
Helix 33
33
A
476 501Right-handed alpha
Helix 34
34
A
518 533Right-handed alpha
Helix 35
35
A
535 556Right-handed alpha
Helix 36
36
A
583 599Right-handed alpha
Helix 37
37
A
641 653Right-handed alpha
Helix 38
38
A
664 674Right-handed alpha
Helix 39
39
A
689 703Right-handed alpha
Helix 40
40
A
729 736Right-handed alpha
Helix 41
41
A
739 749Right-handed alpha
Helix 42
42
A
773 778Right-handed 310
Helix 43
43
A
779 785Right-handed alpha
Helix 44
44
A
835 844Right-handed alpha
Helix 45
45
A
864 873Right-handed alpha
Helix 46
46
A
875 891Right-handed alpha
Helix 47
47
A
893 904Right-handed alpha
Helix 48
48
A
904 919Right-handed alpha
Helix 49
49
A
923 952Right-handed alpha
Helix 50
50
A
954 960Right-handed alpha
Helix 51
51
A
965 993Right-handed alpha
Helix 52
52
A
1013 1018Right-handed alpha
Helix 53
53
A
1018 1023Right-handed alpha
Helix 54
54
A
1023 1036Right-handed alpha
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There are 21 sheets in PDB entry 4DNR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 98first strand
Strand 2
B
376 378anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 102first strand
Strand 2
B
324 328anti-parallel
Strand 3
B
364 367anti-parallel
Strand 4
B
357 360anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
265 267first strand
Strand 2
B
312 320anti-parallel
Strand 3
B
105 115anti-parallel
Strand 4
B
243 251anti-parallel
Strand 5
B
293 301anti-parallel
Strand 6
B
282 287anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 124first strand
Strand 2
B
236 239anti-parallel
Strand 3
B
216 220anti-parallel
Strand 4
B
143 144anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 211first strand
Strand 2
B
149 154anti-parallel
Strand 3
B
130 135anti-parallel
Strand 4
B
228 229anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
332 334first strand
Strand 2
B
339 344anti-parallel
Strand 3
B
350 354anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
82 83first strand
Strand 2
C
349 354anti-parallel
Strand 3
C
339 344anti-parallel
Strand 4
C
333 334anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
95 98first strand
Strand 2
C
376 380anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
100 103first strand
Strand 2
C
323 328anti-parallel
Strand 3
C
364 369anti-parallel
Strand 4
C
356 361anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
143 144first strand
Strand 2
C
216 220anti-parallel
Strand 3
C
236 251anti-parallel
Strand 4
C
106 124anti-parallel
Strand 5
C
312 319anti-parallel
Strand 6
C
263 267anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
143 144first strand
Strand 2
C
216 220anti-parallel
Strand 3
C
236 251anti-parallel
Strand 4
C
293 301anti-parallel
Strand 5
C
278 288anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
131 135first strand
Strand 2
C
149 154anti-parallel
Strand 3
C
207 211anti-parallel
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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
A
46 52anti-parallel
Strand 3
A
90 97anti-parallel
Strand 4
A
79 87anti-parallel
Strand 5
A
812 816anti-parallel
Strand 6
A
819 827anti-parallel
Strand 7
A
710 712anti-parallel
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There are 8 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
A
46 52anti-parallel
Strand 3
A
90 97anti-parallel
Strand 4
A
79 87anti-parallel
Strand 5
A
812 816anti-parallel
Strand 6
A
819 827anti-parallel
Strand 7
A
681 686anti-parallel
Strand 8
A
855 858anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 180first strand
Strand 2
A
285 291anti-parallel
Strand 3
A
138 145anti-parallel
Strand 4
A
320 325anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 268first strand
Strand 2
A
186 191anti-parallel
Strand 3
A
764 771parallel
Strand 4
A
755 761anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 224first strand
Strand 2
A
227 233anti-parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 250first strand
Strand 2
A
256 258anti-parallel
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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 278first strand
Strand 2
A
602 608anti-parallel
Strand 3
A
626 630anti-parallel
Strand 4
A
570 572anti-parallel
Strand 5
A
662 663anti-parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
721 728first strand
Strand 2
A
802 809anti-parallel
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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
787 789first strand
Strand 2
A
795 797anti-parallel
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