Analysis of interatomic Contacts of Structural Units in PDB entry:
4DNT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DNT entry

There are 3 chains in PDB entry 4DNT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ALA 79SER 400
C
 ALA 79SER 402
A
 MET 1ASN 668
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 4DNT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
158 171Right-handed alpha
Helix 2
2
B
174 188Right-handed alpha
Helix 3
3
B
191 202Right-handed alpha
Helix 4
4
B
254 259Right-handed alpha
Helix 5
5
B
390 397Right-handed alpha
Helix 6
6
C
85 93Right-handed alpha
Helix 7
7
C
158 171Right-handed alpha
Helix 8
8
C
174 188Right-handed alpha
Helix 9
9
C
191 202Right-handed alpha
Helix 10
10
C
253 258Right-handed 310
Helix 11
11
C
381 392Right-handed alpha
Helix 12
12
C
393 401Right-handed alpha
Helix 13
13
A
2 13Right-handed alpha
Helix 14
14
A
15 33Right-handed alpha
Helix 15
15
A
57 65Right-handed alpha
Helix 16
16
A
65 75Right-handed alpha
Helix 17
17
A
102 116Right-handed alpha
Helix 18
18
A
117 121Right-handed 310
Helix 19
19
A
134 136Right-handed 310
Helix 20
20
A
152 163Right-handed alpha
Helix 21
21
A
163 169Right-handed alpha
Helix 22
22
A
192 200Right-handed alpha
Helix 23
23
A
202 211Right-handed alpha
Helix 24
24
A
239 245Right-handed alpha
Helix 25
25
A
296 313Right-handed alpha
Helix 26
26
A
327 353Right-handed alpha
Helix 27
27
A
359 368Right-handed alpha
Helix 28
28
A
369 385Right-handed alpha
Helix 29
29
A
389 416Right-handed alpha
Helix 30
30
A
435 440Right-handed alpha
Helix 31
31
A
445 452Right-handed alpha
Helix 32
32
A
453 460Right-handed alpha
Helix 33
33
A
461 467Right-handed 310
Helix 34
34
A
468 491Right-handed alpha
Helix 35
35
A
496 501Right-handed alpha
Helix 36
36
A
518 533Right-handed alpha
Helix 37
37
A
535 537Right-handed 310
Helix 38
38
A
538 548Right-handed alpha
Helix 39
39
A
550 555Right-handed alpha
Helix 40
40
A
581 597Right-handed alpha
Helix 41
41
A
632 636Right-handed 310
Helix 42
42
A
641 653Right-handed alpha
Helix 43
43
A
664 675Right-handed alpha
Helix 44
44
A
689 705Right-handed alpha
Helix 45
45
A
729 736Right-handed alpha
Helix 46
46
A
739 749Right-handed alpha
Helix 47
47
A
773 778Right-handed 310
Helix 48
48
A
779 785Right-handed alpha
Helix 49
49
A
832 848Right-handed alpha
Helix 50
50
A
861 873Right-handed alpha
Helix 51
51
A
875 891Right-handed alpha
Helix 52
52
A
893 901Right-handed alpha
Helix 53
53
A
904 919Right-handed alpha
Helix 54
54
A
923 941Right-handed alpha
Helix 55
55
A
958 963Right-handed alpha
Helix 56
56
A
965 970Right-handed alpha
Helix 57
57
A
970 975Right-handed alpha
Helix 58
58
A
980 996Right-handed alpha
Helix 59
59
A
997 1000Right-handed 310
Helix 60
60
A
1005 1031Right-handed alpha
Helix 61
61
A
1031 1039Right-handed alpha
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There are 21 sheets in PDB entry 4DNT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 98first strand
Strand 2
B
376 378anti-parallel
Strand 3
B
339 344anti-parallel
Strand 4
B
332 334anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 98first strand
Strand 2
B
376 378anti-parallel
Strand 3
B
339 344anti-parallel
Strand 4
B
350 354anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 102first strand
Strand 2
B
324 328anti-parallel
Strand 3
B
364 369anti-parallel
Strand 4
B
356 361anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
271 278first strand
Strand 2
B
264 268anti-parallel
Strand 3
B
312 320anti-parallel
Strand 4
B
105 115anti-parallel
Strand 5
B
244 251anti-parallel
Strand 6
B
293 300anti-parallel
Strand 7
B
282 288anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 124first strand
Strand 2
B
236 239anti-parallel
Strand 3
B
216 220anti-parallel
Strand 4
B
143 144anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 211first strand
Strand 2
B
149 154anti-parallel
Strand 3
B
130 135anti-parallel
Strand 4
B
228 229anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
95 98first strand
Strand 2
C
376 380anti-parallel
Strand 3
C
339 344anti-parallel
Strand 4
C
333 334anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
95 98first strand
Strand 2
C
376 380anti-parallel
Strand 3
C
339 344anti-parallel
Strand 4
C
350 354anti-parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
143 144first strand
Strand 2
C
216 220anti-parallel
Strand 3
C
236 251anti-parallel
Strand 4
C
100 124anti-parallel
Strand 5
C
312 328anti-parallel
Strand 6
C
293 300first strand
Strand 7
C
278 288anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
263 267first strand
Strand 2
C
312 328anti-parallel
Strand 3
C
100 124anti-parallel
Strand 4
C
236 251anti-parallel
Strand 5
C
364 369first strand
Strand 6
C
356 361anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
207 211first strand
Strand 2
C
149 154anti-parallel
Strand 3
C
130 135anti-parallel
Strand 4
C
228 229anti-parallel
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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 129first strand
Strand 2
A
46 52anti-parallel
Strand 3
A
90 97anti-parallel
Strand 4
A
79 87anti-parallel
Strand 5
A
813 816anti-parallel
Strand 6
A
819 827anti-parallel
Strand 7
A
712 715anti-parallel
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There are 8 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 129first strand
Strand 2
A
46 52anti-parallel
Strand 3
A
90 97anti-parallel
Strand 4
A
79 87anti-parallel
Strand 5
A
813 816anti-parallel
Strand 6
A
819 827anti-parallel
Strand 7
A
681 686anti-parallel
Strand 8
A
855 860anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 181first strand
Strand 2
A
283 291anti-parallel
Strand 3
A
138 146anti-parallel
Strand 4
A
319 326anti-parallel
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There are 7 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 181first strand
Strand 2
A
283 291anti-parallel
Strand 3
A
274 278anti-parallel
Strand 4
A
602 610anti-parallel
Strand 5
A
624 630anti-parallel
Strand 6
A
569 572anti-parallel
Strand 7
A
662 663anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 269first strand
Strand 2
A
185 191anti-parallel
Strand 3
A
764 771parallel
Strand 4
A
755 761anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 224first strand
Strand 2
A
227 233anti-parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 250first strand
Strand 2
A
256 258anti-parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
558 559first strand
Strand 2
A
921 922parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
721 728first strand
Strand 2
A
802 809anti-parallel
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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
787 789first strand
Strand 2
A
795 797anti-parallel
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