Analysis of interatomic Contacts of Structural Units in PDB entry:
4DNV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4DNV entry

There are 4 chains in PDB entry 4DNV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 12	GLY 381
B	PRO 14	GLY 381
C	ALA 12	GLY 381
D	PRO 14	MET 228

There are 27 helices in PDB entry 4DNV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	62	65	Right-handed 310
Helix 2	2	A	95	99	Right-handed 310
Helix 3	3	A	115	118	Right-handed 310
Helix 4	4	A	167	170	Right-handed 310
Helix 5	5	A	271	274	Right-handed 310
Helix 6	6	A	324	328	Right-handed 310
Helix 7	7	A	375	378	Right-handed 310
Helix 8	8	B	62	65	Right-handed 310
Helix 9	9	B	95	99	Right-handed 310
Helix 10	10	B	115	118	Right-handed 310
Helix 11	11	B	167	170	Right-handed 310
Helix 12	12	B	271	274	Right-handed 310
Helix 13	13	B	324	328	Right-handed 310
Helix 14	14	C	62	65	Right-handed 310
Helix 15	15	C	95	99	Right-handed 310
Helix 16	16	C	115	118	Right-handed 310
Helix 17	17	C	167	170	Right-handed 310
Helix 18	18	C	271	274	Right-handed 310
Helix 19	19	C	324	328	Right-handed 310
Helix 20	20	C	375	378	Right-handed 310
Helix 21	21	D	62	65	Right-handed 310
Helix 22	22	D	95	99	Right-handed 310
Helix 23	23	D	115	118	Right-handed 310
Helix 24	24	D	167	170	Right-handed 310
Helix 25	25	D	271	274	Right-handed 310
Helix 26	26	D	324	328	Right-handed 310
Helix 27	27	D	375	378	Right-handed 310

There are 28 sheets in PDB entry 4DNV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	22	first strand
Strand 2	A	26	31	anti-parallel
Strand 3	A	35	40	anti-parallel
Strand 4	A	55	60	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	75	first strand
Strand 2	A	78	83	anti-parallel
Strand 3	A	88	93	anti-parallel
Strand 4	A	108	113	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	127	first strand
Strand 2	A	131	136	anti-parallel
Strand 3	A	141	145	anti-parallel
Strand 4	A	160	165	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	179	first strand
Strand 2	A	183	188	anti-parallel
Strand 3	A	193	197	anti-parallel
Strand 4	A	212	217	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	231	first strand
Strand 2	A	235	240	anti-parallel
Strand 3	A	245	249	anti-parallel
Strand 4	A	264	269	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	283	first strand
Strand 2	A	287	292	anti-parallel
Strand 3	A	297	301	anti-parallel
Strand 4	A	316	322	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	330	335	first strand
Strand 2	A	339	344	anti-parallel
Strand 3	A	349	353	anti-parallel
Strand 4	A	368	373	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	22	first strand
Strand 2	B	26	31	anti-parallel
Strand 3	B	35	40	anti-parallel
Strand 4	B	55	60	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	74	first strand
Strand 2	B	78	83	anti-parallel
Strand 3	B	88	93	anti-parallel
Strand 4	B	108	113	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	127	first strand
Strand 2	B	131	136	anti-parallel
Strand 3	B	141	145	anti-parallel
Strand 4	B	160	165	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	179	first strand
Strand 2	B	183	188	anti-parallel
Strand 3	B	193	197	anti-parallel
Strand 4	B	212	217	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	231	first strand
Strand 2	B	235	240	anti-parallel
Strand 3	B	245	249	anti-parallel
Strand 4	B	264	269	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	283	first strand
Strand 2	B	287	292	anti-parallel
Strand 3	B	297	301	anti-parallel
Strand 4	B	316	321	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	330	335	first strand
Strand 2	B	339	344	anti-parallel
Strand 3	B	349	353	anti-parallel
Strand 4	B	368	373	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	22	first strand
Strand 2	C	26	31	anti-parallel
Strand 3	C	35	40	anti-parallel
Strand 4	C	55	60	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	74	first strand
Strand 2	C	78	83	anti-parallel
Strand 3	C	88	93	anti-parallel
Strand 4	C	108	113	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	127	first strand
Strand 2	C	131	136	anti-parallel
Strand 3	C	141	145	anti-parallel
Strand 4	C	160	165	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	174	179	first strand
Strand 2	C	183	188	anti-parallel
Strand 3	C	193	197	anti-parallel
Strand 4	C	212	217	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	231	first strand
Strand 2	C	235	240	anti-parallel
Strand 3	C	245	249	anti-parallel
Strand 4	C	264	269	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	278	283	first strand
Strand 2	C	287	292	anti-parallel
Strand 3	C	297	301	anti-parallel
Strand 4	C	316	322	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	330	335	first strand
Strand 2	C	339	344	anti-parallel
Strand 3	C	349	353	anti-parallel
Strand 4	C	368	373	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	22	first strand
Strand 2	D	26	31	anti-parallel
Strand 3	D	35	40	anti-parallel
Strand 4	D	55	60	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	74	first strand
Strand 2	D	78	83	anti-parallel
Strand 3	D	88	93	anti-parallel
Strand 4	D	108	113	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	122	127	first strand
Strand 2	D	131	136	anti-parallel
Strand 3	D	141	145	anti-parallel
Strand 4	D	160	165	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	174	179	first strand
Strand 2	D	183	188	anti-parallel
Strand 3	D	193	197	anti-parallel
Strand 4	D	212	217	anti-parallel

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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	226	231	first strand
Strand 2	D	235	240	anti-parallel
Strand 3	D	245	249	anti-parallel
Strand 4	D	264	269	anti-parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	278	283	first strand
Strand 2	D	287	292	anti-parallel
Strand 3	D	297	301	anti-parallel
Strand 4	D	316	321	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	330	335	first strand
Strand 2	D	339	344	anti-parallel
Strand 3	D	348	353	anti-parallel
Strand 4	D	368	373	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4DNV

Analysis of interatomic Contacts of Structural Units in PDB entry:
4DNV