Analysis of interatomic Contacts of Structural Units in PDB entry:
4DNW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DNW entry

There are 2 chains in PDB entry 4DNW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 13GLY 381
B
 ALA 12GLN 385
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 4DNW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
62 65Right-handed 310
Helix 2
2
A
95 99Right-handed 310
Helix 3
3
A
115 118Right-handed 310
Helix 4
4
A
167 170Right-handed 310
Helix 5
5
A
271 274Right-handed 310
Helix 6
6
A
324 328Right-handed 310
Helix 7
7
A
375 378Right-handed 310
Helix 8
8
B
62 65Right-handed 310
Helix 9
9
B
95 99Right-handed 310
Helix 10
10
B
115 118Right-handed 310
Helix 11
11
B
167 170Right-handed 310
Helix 12
12
B
271 274Right-handed 310
Helix 13
13
B
324 328Right-handed 310
Helix 14
14
B
375 378Right-handed 310
Back to top of page

There are 14 sheets in PDB entry 4DNW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 22first strand
Strand 2
A
26 31anti-parallel
Strand 3
A
35 40anti-parallel
Strand 4
A
55 60anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 74first strand
Strand 2
A
78 83anti-parallel
Strand 3
A
88 93anti-parallel
Strand 4
A
108 113anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 127first strand
Strand 2
A
131 136anti-parallel
Strand 3
A
141 145anti-parallel
Strand 4
A
160 165anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 179first strand
Strand 2
A
183 188anti-parallel
Strand 3
A
193 197anti-parallel
Strand 4
A
212 217anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 231first strand
Strand 2
A
235 240anti-parallel
Strand 3
A
245 249anti-parallel
Strand 4
A
264 269anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 283first strand
Strand 2
A
287 292anti-parallel
Strand 3
A
297 301anti-parallel
Strand 4
A
316 321anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
330 335first strand
Strand 2
A
339 344anti-parallel
Strand 3
A
349 353anti-parallel
Strand 4
A
368 373anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 22first strand
Strand 2
B
26 31anti-parallel
Strand 3
B
35 40anti-parallel
Strand 4
B
55 60anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 74first strand
Strand 2
B
78 83anti-parallel
Strand 3
B
88 93anti-parallel
Strand 4
B
108 113anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 127first strand
Strand 2
B
131 136anti-parallel
Strand 3
B
141 145anti-parallel
Strand 4
B
160 165anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 179first strand
Strand 2
B
183 188anti-parallel
Strand 3
B
193 197anti-parallel
Strand 4
B
212 218anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
226 231first strand
Strand 2
B
235 240anti-parallel
Strand 3
B
245 249anti-parallel
Strand 4
B
264 269anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
278 283first strand
Strand 2
B
287 292anti-parallel
Strand 3
B
297 301anti-parallel
Strand 4
B
316 322anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
330 335first strand
Strand 2
B
339 344anti-parallel
Strand 3
B
349 353anti-parallel
Strand 4
B
368 373anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il